RNA–Protein interactions for RNA: ENST00000485746.1

PTCD1-205, Transcript of pentatricopeptide repeat domain 1, humanhuman

TSL 3

Gene PTCD1, Length 721 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-205ENST00000485746 GRSF1Q12849 480 aaKnown RBP eCLIP13.17□□□□□ -0.3
PTCD1-205ENST00000485746 CNGA2Q16280 664 aa13.17□□□□□ -0.3
PTCD1-205ENST00000485746 GJB7Q6PEY0 223 aa13.17□□□□□ -0.3
PTCD1-205ENST00000485746 TRIM65Q6PJ69 517 aa13.17□□□□□ -0.3
PTCD1-205ENST00000485746 RSRC2Q7L4I2 434 aaKnown RBP13.17□□□□□ -0.3
PTCD1-205ENST00000485746 TTC30AQ86WT1 665 aa13.17□□□□□ -0.3
PTCD1-205ENST00000485746 SIX6OS1Q8N1H7 587 aa13.17□□□□□ -0.3
PTCD1-205ENST00000485746 RIN3Q8TB24 985 aa13.17□□□□□ -0.3
PTCD1-205ENST00000485746 KREMEN1Q96MU8 473 aa13.17□□□□□ -0.3
PTCD1-205ENST00000485746 CDK5RAP1Q96SZ6 601 aaKnown RBP13.17□□□□□ -0.3
PTCD1-205ENST00000485746 FAM86C1Q9NVL1 165 aa13.17□□□□□ -0.3
PTCD1-205ENST00000485746 TBC1D14Q9P2M4 693 aa13.17□□□□□ -0.3
PTCD1-205ENST00000485746 APEX2Q9UBZ4 518 aa13.17□□□□□ -0.3
PTCD1-205ENST00000485746 DNMT3LQ9UJW3 386 aa13.17□□□□□ -0.3
PTCD1-205ENST00000485746 LSM7Q9UK45 103 aaKnown RBP13.17□□□□□ -0.3
PTCD1-205ENST00000485746 GTPBP10A4D1E9 387 aaKnown RBP13.16□□□□□ -0.3
PTCD1-205ENST00000485746 O00370 1275 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 LETM1O95202 739 aaPredicted RBP13.16□□□□□ -0.3
PTCD1-205ENST00000485746 OLFM2O95897 454 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 TBX18O95935 607 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 ZBED1O96006 694 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 CALCAP01258 141 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 PON1P27169 355 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 RPS9P46781 194 aaKnown RBP13.16□□□□□ -0.3
PTCD1-205ENST00000485746 RGS7P49802 495 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 PPP2R5DQ14738 602 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 EML3Q32P44 896 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 TCP11X2Q5H9J9 407 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 DGKKQ5KSL6 1271 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 BTBD8Q5XKL5 378 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 LCLAT1Q6UWP7 414 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 RBM43Q6ZSC3 357 aaKnown RBP13.16□□□□□ -0.3
PTCD1-205ENST00000485746 CCDC186Q7Z3E2 898 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 TFAP2BQ92481 460 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 CLDN23Q96B33 292 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 ULBP1Q9BZM6 244 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 TAB2Q9NYJ8 693 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 DLGAP2Q9P1A6 1054 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 RASAL2Q9UJF2 1139 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 NUDT5Q9UKK9 219 aa13.16□□□□□ -0.3
PTCD1-205ENST00000485746 E2F8A0AVK6 867 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 TULP2O00295 520 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 THAP12O43422 761 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 EEF1GP26641 437 aaKnown RBP13.15□□□□□ -0.3
PTCD1-205ENST00000485746 GJA4P35212 333 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 PLA2G4AP47712 749 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 PGFP49763 221 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 YWHAGP61981 247 aaKnown RBP eCLIP13.15□□□□□ -0.3
PTCD1-205ENST00000485746 ZXDBP98169 803 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 CSTF1Q05048 431 aaKnown RBP13.15□□□□□ -0.3
PTCD1-205ENST00000485746 ADIGQ0VDE8 80 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 EFEMP1Q12805 493 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 CAVIN1Q6NZI2 390 aaKnown RBP13.15□□□□□ -0.3
PTCD1-205ENST00000485746 TXNDC11Q6PKC3 985 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 RNF139Q8WU17 664 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 GOLGA1Q92805 767 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 CD101Q93033 1021 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 SECISBP2LQ93073 1101 aaKnown RBP13.15□□□□□ -0.3
PTCD1-205ENST00000485746 P2RY13Q9BPV8 354 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 NAT10Q9H0A0 1025 aaKnown RBP13.15□□□□□ -0.3
PTCD1-205ENST00000485746 VPS16Q9H269 839 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 NMUR1Q9HB89 426 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 ST7Q9NRC1 585 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 RBM12Q9NTZ6 932 aaKnown RBP13.15□□□□□ -0.3
PTCD1-205ENST00000485746 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.15□□□□□ -0.3
PTCD1-205ENST00000485746 DNAJC12Q9UKB3 198 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 STRIP2Q9ULQ0 834 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.15□□□□□ -0.3
PTCD1-205ENST00000485746 USP3Q9Y6I4 520 aa13.15□□□□□ -0.3
PTCD1-205ENST00000485746 OTOL1A6NHN0 477 aaPredicted RBP13.14□□□□□ -0.31
PTCD1-205ENST00000485746 SHISA7A6NL88 538 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 PIK3R2O00459 728 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 MDM4O15151 490 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 ADH1CP00326 375 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 HMBSP08397 361 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 CHRNB1P11230 501 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 GNA15P30679 374 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 GALK1P51570 392 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 APBA1Q02410 837 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 TYRO3Q06418 890 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 MTAPQ13126 283 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 RAPGEF1Q13905 1077 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 DHCR24Q15392 516 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 RAB41Q5JT25 222 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 FKBP15Q5T1M5 1219 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 C11orf57Q6ZUT1 292 aaPredicted RBP13.14□□□□□ -0.31
PTCD1-205ENST00000485746 SCD5Q86SK9 330 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 MIB1Q86YT6 1006 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 ADGRG2Q8IZP9 1017 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 KIAA1958Q8N8K9 716 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 KCTD13Q8WZ19 329 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 NDRG1Q92597 394 aaKnown RBP13.14□□□□□ -0.31
PTCD1-205ENST00000485746 OTUB2Q96DC9 234 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 PCMTD1Q96MG8 357 aaPredicted RBP13.14□□□□□ -0.31
PTCD1-205ENST00000485746 IER2Q9BTL4 223 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 LSM14BQ9BX40 385 aaKnown RBP13.14□□□□□ -0.31
PTCD1-205ENST00000485746 KLF16Q9BXK1 252 aaPredicted RBP13.14□□□□□ -0.31
PTCD1-205ENST00000485746 CHRDQ9H2X0 955 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 CYLDQ9NQC7 956 aa13.14□□□□□ -0.31
PTCD1-205ENST00000485746 FANCLQ9NW38 375 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms