RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ATMINO43313 823 aaPredicted RBP12.84□□□□□ -0.35
SDC1-206ENST00000482879 TBX10O75333 385 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 PAPLNO95428 1278 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 ABL1P00519 1130 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 F11P03951 625 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 RHOP08100 348 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 TMEM253P0C7T8 217 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 GABRR2P28476 465 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 LTBRP36941 435 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 RNASE9P60153 205 aaKnown RBP12.84□□□□□ -0.35
SDC1-206ENST00000482879 PABPC1LQ4VXU2 614 aaKnown RBP12.84□□□□□ -0.35
SDC1-206ENST00000482879 EFHC1Q5JVL4 640 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 FAM102AQ5T9C2 384 aaPredicted RBP12.84□□□□□ -0.35
SDC1-206ENST00000482879 DNAJC24Q6P3W2 148 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 OLFML1Q6UWY5 402 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 HFE2Q6ZVN8 426 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 BHLHA9Q7RTU4 235 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 SCD5Q86SK9 330 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 GPR149Q86SP6 731 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 KIAA1328Q86T90 577 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 MON1AQ86VX9 555 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 TMC8Q8IU68 726 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 ARHGAP18Q8N392 663 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 LEMD2Q8NC56 503 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 PDZD8Q8NEN9 1154 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 FEZF2Q8TBJ5 459 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 OVCA2Q8WZ82 227 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 GOLGA1Q92805 767 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 FAM149B1Q96BN6 582 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 PIWIL1Q96J94 861 aaKnown RBP12.84□□□□□ -0.35
SDC1-206ENST00000482879 SELENOOQ9BVL4 669 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 LRRC3Q9BY71 257 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 IL21Q9HBE4 155 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 TLR8Q9NR97 1041 aaKnown RBP12.84□□□□□ -0.35
SDC1-206ENST00000482879 TRPM5Q9NZQ8 1165 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 ADGRG1Q9Y653 693 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 SIGLEC16A6NMB1 481 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 GRAP2O75791 330 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 GJB6O95452 261 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 FGF19O95750 216 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 LTFP02788 710 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 CYP1A2P05177 515 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 GLI1P08151 1106 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 CDC25CP30307 473 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 SCNN1AP37088 669 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 PPP3CCP48454 512 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 PGFP49763 221 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 VAV2P52735 878 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 EPHA5P54756 1037 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 GSCP56915 257 aaPredicted RBP12.83□□□□□ -0.36
SDC1-206ENST00000482879 YWHAGP61981 247 aaKnown RBP eCLIP12.83□□□□□ -0.36
SDC1-206ENST00000482879 YWHAZP63104 245 aaKnown RBP12.83□□□□□ -0.36
SDC1-206ENST00000482879 NTHL1P78549 312 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 ITIH3Q06033 890 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 TAF5Q15542 800 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 BSPRYQ5W0U4 402 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 BTBD8Q5XKL5 378 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 PLEKHA7Q6IQ23 1121 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 CES5AQ6NT32 575 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 GAREM2Q75VX8 874 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 PDZD4Q76G19 769 aaPredicted RBP12.83□□□□□ -0.36
SDC1-206ENST00000482879 SLC26A9Q7LBE3 791 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 TXLNBQ8N3L3 684 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 C3orf20Q8ND61 904 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 KHSRPQ92945 711 aaKnown RBP eCLIP12.83□□□□□ -0.36
SDC1-206ENST00000482879 ARHGEF26Q96DR7 871 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 GCNAQ96QF7 691 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 S1PR5Q9H228 398 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 ADAM7Q9H2U9 754 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 ATXN3LQ9H3M9 355 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 NMUR1Q9HB89 426 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 AVENQ9NQS1 362 aaPredicted RBP12.83□□□□□ -0.36
SDC1-206ENST00000482879 METTL5Q9NRN9 209 aaKnown RBP12.83□□□□□ -0.36
SDC1-206ENST00000482879 PARVAQ9NVD7 372 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 ASNSD1Q9NWL6 643 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.83□□□□□ -0.36
SDC1-206ENST00000482879 NCANO14594 1321 aa12.83□□□□□ -0.36
SDC1-206ENST00000482879 SZT2Q5T011 3432 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 TCRBV5S1A1TA0A578 114 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 ZNF840PA6NDX5 716 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 ZNF197O14709 1029 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 HSF2BPO75031 334 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 CCDC175P0C221 793 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 ZDHHC11BP0C7U3 371 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 RALAP11233 206 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 KRT3P12035 628 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 GJA1P17302 382 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 PSEN1P49768 467 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 MAMLD1Q13495 774 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 CLUL1Q15846 466 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 ATAT1Q5SQI0 421 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 DCUN1D2Q6PH85 259 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 TMEM150AQ86TG1 271 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 EDEM1Q92611 657 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 MRPS31Q92665 395 aaKnown RBP12.82□□□□□ -0.36
SDC1-206ENST00000482879 TRIM44Q96DX7 344 aaPredicted RBP12.82□□□□□ -0.36
SDC1-206ENST00000482879 TCEAL4Q96EI5 215 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 MSLNLQ96KJ4 702 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 NUP85Q9BW27 656 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 MRPL47Q9HD33 250 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms