RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 NUDT18Q6ZVK8 323 aa12.83□□□□□ -0.36
SQSTM1-207ENST00000481335 TADA2BQ86TJ2 420 aa12.83□□□□□ -0.36
SQSTM1-207ENST00000481335 ZNF276Q8N554 614 aa12.83□□□□□ -0.36
SQSTM1-207ENST00000481335 SCAMP5Q8TAC9 235 aa12.83□□□□□ -0.36
SQSTM1-207ENST00000481335 KCNV2Q8TDN2 545 aa12.83□□□□□ -0.36
SQSTM1-207ENST00000481335 DDX1Q92499 740 aaKnown RBP12.83□□□□□ -0.36
SQSTM1-207ENST00000481335 GSDMAQ96QA5 445 aa12.83□□□□□ -0.36
SQSTM1-207ENST00000481335 PNKPQ96T60 521 aa12.83□□□□□ -0.36
SQSTM1-207ENST00000481335 SMOQ99835 787 aa12.83□□□□□ -0.36
SQSTM1-207ENST00000481335 NACA2Q9H009 215 aa12.83□□□□□ -0.36
SQSTM1-207ENST00000481335 GOLPH3LQ9H4A5 285 aa12.83□□□□□ -0.36
SQSTM1-207ENST00000481335 SMPD4Q9NXE4 827 aa12.83□□□□□ -0.36
SQSTM1-207ENST00000481335 MMP17Q9ULZ9 603 aa12.83□□□□□ -0.36
SQSTM1-207ENST00000481335 SCML2Q9UQR0 700 aa12.83□□□□□ -0.36
SQSTM1-207ENST00000481335 CNOT1A5YKK6 2376 aaKnown RBP12.83□□□□□ -0.36
SQSTM1-207ENST00000481335 K7EQS6 105 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 CETN3O15182 167 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 SLC16A3O15427 465 aaKnown RBP12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 TLR5O60602 858 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 RHOBTB1O94844 696 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 ZNF806P0C7X5 589 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 EPB41P11171 864 aaKnown RBP12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 GRIA2P42262 883 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 TNFRSF4P43489 277 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 GCLMP48507 274 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 MXI1P50539 228 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 DGKEP52429 567 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 MAP3K7CLP57077 242 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 NUCB2P80303 420 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 PPP3CAQ08209 521 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 ELF2Q15723 593 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 BTBD8Q5XKL5 378 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 NAIF1Q69YI7 327 aaPredicted RBP12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 SPOPLQ6IQ16 392 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 RHBDF2Q6PJF5 856 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 CLEC20AQ6ZU45 233 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 TRMT11Q7Z4G4 463 aaKnown RBP12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 RASSF3Q86WH2 238 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 FBXL13Q8NEE6 735 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 TSTD1Q8NFU3 115 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 TAS1R2Q8TE23 839 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 CYFIP2Q96F07 1278 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 CNOT6LQ96LI5 555 aaKnown RBP12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 HHIPQ96QV1 700 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 CDK5RAP1Q96SZ6 601 aaKnown RBP12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 GMIPQ9P107 970 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 HMGXB4Q9UGU5 601 aa12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 HOOK1Q9UJC3 728 aaKnown RBP12.82□□□□□ -0.36
SQSTM1-207ENST00000481335 THADAQ6YHU6 1953 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 GOLGA6L4A6NEF3 574 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 ALDH1A2O94788 518 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 KAT7O95251 611 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 SMC2O95347 1197 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 TRIM49P0CI25 452 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 TRIM49CP0CI26 452 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 ATP5C1P36542 298 aaKnown RBP12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 PPP1R2P41236 205 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 LRRC63Q05C16 580 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 CRY1Q16526 586 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 PLK5Q496M5 336 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 USP39Q53GS9 565 aaKnown RBP12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 EOGTQ5NDL2 527 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 ZNF658Q5TYW1 1059 aaPredicted RBP12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 HTR3DQ70Z44 454 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 CCDC186Q7Z3E2 898 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 ETFBKMTQ8IXQ9 262 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 ZC3H3Q8IXZ2 948 aaKnown RBP12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 FMR1NBQ8N0W7 255 aaPredicted RBP12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 C12orf29Q8N999 325 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 SPATA20Q8TB22 786 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 TSG101Q99816 390 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 CCSER2Q9H7U1 834 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 APOBEC3GQ9HC16 384 aaKnown RBP12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 SPHK2Q9NRA0 654 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 FAM49BQ9NUQ9 324 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 CHORDC1Q9UHD1 332 aaPredicted RBP12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 LSM7Q9UK45 103 aaKnown RBP12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 MAPK8IP1Q9UQF2 711 aa12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.81□□□□□ -0.36
SQSTM1-207ENST00000481335 HHLA1C9JL84 531 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 BEST1O76090 585 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 PXNP49023 591 aaPredicted RBP12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 KIF11P52732 1056 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 FKBP3Q00688 224 aaKnown RBP12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 PLA2G2CQ5R387 149 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 LY6G5CQ5SRR4 150 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 KBTBD6Q86V97 674 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 ELOA2Q8IYF1 753 aaPredicted RBP12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 C12orf50Q8NA57 414 aaPredicted RBP12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 CHAMP1Q96JM3 812 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 TIGD1Q96MW7 591 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 TWNKQ96RR1 684 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 DUSP16Q9BY84 665 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 UBXN6Q9BZV1 441 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 POLMQ9NP87 494 aaPredicted RBP12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.8□□□□□ -0.362e-8■■■■■ 31.1
SQSTM1-207ENST00000481335 ARHGEF4Q9NR80 690 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 VPS45Q9NRW7 570 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 RAB20Q9NX57 234 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 CLIC5Q9NZA1 410 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms