RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 GRIA2P42262 883 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 TNFRSF4P43489 277 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 NDST1P52848 882 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 INCA1Q0VD86 236 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 LY6G5CQ5SRR4 150 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 EMC10Q5UCC4 262 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 PMS2CLQ68D20 193 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 HTR3DQ70Z44 454 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 C12orf29Q8N999 325 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 DDX1Q92499 740 aaKnown RBP12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CHAMP1Q96JM3 812 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SMOC1Q9H4F8 434 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 VPS45Q9NRW7 570 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SGK1O00141 431 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SCAMP3O14828 347 aaKnown RBP12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 HOXC11O43248 304 aaPredicted RBP12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 AP1G2O75843 785 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 RHOBTB1O94844 696 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ADH1CP00326 375 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 HLA-DRAP01903 254 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ADH5P11766 374 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CCDC130P13994 396 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 DGKEP52429 567 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 DPYDQ12882 1025 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ZCWPW2Q504Y3 356 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 STPG1Q5TH74 334 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SPOPLQ6IQ16 392 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SCARA5Q6ZMJ2 495 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ZNF276Q8N554 614 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CCDC33Q8N5R6 958 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 MDGA1Q8NFP4 955 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 TSTD1Q8NFU3 115 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SLC2A14Q8TDB8 520 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 KCNV2Q8TDN2 545 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 WHAMMQ8TF30 809 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 TWNKQ96RR1 684 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 HNRNPABQ99729 332 aaKnown RBP12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 LSM14BQ9BX40 385 aaKnown RBP12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 KLF16Q9BXK1 252 aaPredicted RBP12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 APOBEC3GQ9HC16 384 aaKnown RBP12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CYLDQ9NQC7 956 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 KRT82Q9NSB4 513 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 OSER1Q9NX31 292 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 GMIPQ9P107 970 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 STARD13Q9Y3M8 1113 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 USP24Q9UPU5 2620 aa12.97□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CAVIN2O95810 425 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 APODP05090 189 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 HSP90AA1P07900 732 aaKnown RBP12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 PRR29P0C7W0 189 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 P4HA1P13674 534 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 VAMP7P51809 220 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 NDUFA8P51970 172 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SEC13P55735 322 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 GAD2Q05329 585 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 PPP3CAQ08209 521 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 IFRD2Q12894 506 aaPredicted RBP12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ELF2Q15723 593 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 AASDHQ4L235 1098 aaPredicted RBP12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 USP39Q53GS9 565 aaKnown RBP12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 TCEAL6Q6IPX3 200 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 KLHDC10Q6PID8 442 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CLEC20AQ6ZU45 233 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 GPRIN1Q7Z2K8 1008 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 C11orf74Q86VG3 221 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 TMEM25Q86YD3 366 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 BBS7Q8IWZ6 715 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ALLCQ8N6M5 410 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 C12orf50Q8NA57 414 aaPredicted RBP12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 TCEAL3Q969E4 200 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 MED10Q9BTT4 135 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 FBXO44Q9H4M3 255 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CYP3A43Q9HB55 503 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CD248Q9HCU0 757 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 PNPLA8Q9NP80 782 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SPHK2Q9NRA0 654 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SCML2Q9UQR0 700 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 FRMD4BQ9Y2L6 1034 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CEP295Q9C0D2 2601 aa12.96□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 A0A1W2PQ27 194 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 A0A1W2PQ64 194 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 A0A1W2PQD8 194 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 CALUO43852 315 aaPredicted RBP12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TLR5O60602 858 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 CILPO75339 1184 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TULP3O75386 442 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TBX18O95935 607 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 BCKDHBP21953 392 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 PMLP29590 882 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 P2RY2P41231 377 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 SYKP43405 635 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 MAP3K7CLP57077 242 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ORC1Q13415 861 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ANO7Q6IWH7 933 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 INTS8Q75QN2 995 aaKnown RBP12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 GUF1Q8N442 669 aaKnown RBP12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TXNDC5Q8NBS9 432 aaKnown RBP12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 SPRYD3Q8NCJ5 442 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TAS1R2Q8TE23 839 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms