RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 PGBD4Q96DM1 585 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 TBCBQ99426 244 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 CNPY3Q9BT09 278 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 ASB7Q9H672 318 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 NPHS2Q9NP85 383 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 AAASQ9NRG9 546 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 STYXL1Q9Y6J8 313 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 DNAJC25-GNG10A0A024R161 153 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 A0A087WUV0 522 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 C2orf71A6NGG8 1288 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 KBTBD13C9JR72 458 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 FGFR1P11362 822 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 OR1G1P47890 313 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 PGGT1BP53609 377 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 GHRHRQ02643 423 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 SOWAHAQ2M3V2 549 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 OSBPL7Q9BZF2 842 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 ETNK2Q9NVF9 386 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 DDX56Q9NY93 547 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 TSR3Q9UJK0 312 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 UBQLN1Q9UMX0 589 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 H0Y3Z8 333 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 DNALI1O14645 258 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 MEFVO15553 781 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 SESN3P58005 492 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 DEUP1Q05D60 604 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 CRHR2Q13324 411 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 LVRNQ6Q4G3 990 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 HFE2Q6ZVN8 426 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 ARFGAP1Q8N6T3 406 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 CCDC185Q8N715 623 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 ZC3H15Q8WU90 426 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 PPM1EQ8WY54 764 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 MAML1Q92585 1016 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 FAM111AQ96PZ2 611 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 ULBP1Q9BZM6 244 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 ABCF3Q9NUQ8 709 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 ZC3H7BQ9UGR2 993 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 A0A1B0GUA9 196 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 CDH16O75309 829 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 LGR5O75473 907 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 ATP5DP30049 168 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 CPA2P48052 419 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 CLCNKBP51801 687 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 MXRA7P84157 204 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 CNGA2Q16280 664 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 KCNT2Q6UVM3 1135 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 PDCD7Q8N8D1 485 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 ARRDC4Q8NCT1 418 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 PCMTD2Q9NV79 361 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 KLHL14Q9P2G3 628 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 GABRQQ9UN88 632 aa14.3□□□□□ -0.12
CCDC88A-211ENST00000471947 MYBPHLA2RUH7 354 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 BEST1O76090 585 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 TRUB2O95900 331 aaKnown RBP14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 AGTP01019 485 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 RPSAP08865 295 aaKnown RBP14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 DARSP14868 501 aaKnown RBP14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 TNFRSF8P28908 595 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 PTK6Q13882 451 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 TFDP2Q14188 446 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 HIC1Q14526 733 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 TRMT10CQ7L0Y3 403 aaKnown RBP14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 MIB1Q86YT6 1006 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 MREGQ8N565 214 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 BBOF1Q8ND07 529 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 KHSRPQ92945 711 aaKnown RBP eCLIP14.29□□□□□ -0.128e-7■■■□□ 15.4
CCDC88A-211ENST00000471947 RILPQ96NA2 401 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 NACA2Q9H009 215 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 TRMT13Q9NUP7 481 aaKnown RBP14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 WHRNQ9P202 907 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 TMEM63AO94886 807 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 TOP3BO95985 862 aaKnown RBP14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 RPA3P35244 121 aaPredicted RBP14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 IL9RQ01113 521 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 SPOUT1Q5T280 376 aaKnown RBP14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 AGBL2Q5U5Z8 902 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 C9orf57Q5W0N0 161 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 SPNS2Q8IVW8 549 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 SENP8Q96LD8 212 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 ZNF518BQ9C0D4 1074 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 LSM8O95777 96 aaKnown RBP14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 PIGRP01833 764 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 ADRA1DP25100 572 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 HOXA11P31270 313 aaPredicted RBP14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 PHBP35232 272 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 GRIK1P39086 918 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 PTP4A2Q12974 167 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 SEPT6Q14141 434 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 MPP2Q14168 576 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 SPRED3Q2MJR0 410 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 MARCH8Q5T0T0 291 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 ZCCHC23Q6ZST2 131 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 PNPLA1Q8N8W4 532 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 ADAM2Q99965 735 aa14.29□□□□□ -0.12
CCDC88A-211ENST00000471947 UGT1A9O60656 530 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 SOAT2O75908 522 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 PCSK7Q16549 785 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 KBTBD12Q3ZCT8 623 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 LDLRAD1Q5T700 205 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms