RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 GSDMAQ96QA5 445 aa17.24■□□□□ 0.35
COL9A3-208ENST00000469802 RMND1Q9NWS8 449 aa17.24■□□□□ 0.35
COL9A3-208ENST00000469802 EBF1Q9UH73 591 aa17.24■□□□□ 0.35
COL9A3-208ENST00000469802 SDK1Q7Z5N4 2213 aa17.24■□□□□ 0.35
COL9A3-208ENST00000469802 TLR5O60602 858 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 ADH1CP00326 375 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 ADH5P11766 374 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 TRIM21P19474 475 aaKnown RBP17.23■□□□□ 0.35
COL9A3-208ENST00000469802 SDHBP21912 280 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 PRCPP42785 496 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 MXI1P50539 228 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 NUCB2P80303 420 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 BECN1Q14457 450 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 CSRP2Q16527 193 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 ZNF658Q5TYW1 1059 aaPredicted RBP17.23■□□□□ 0.35
COL9A3-208ENST00000469802 CEP68Q76N32 757 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 PHTF2Q8N3S3 785 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 CYFIP2Q96F07 1278 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 EEF2KMTQ96G04 330 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 LOXL4Q96JB6 756 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 MMRN2Q9H8L6 949 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 CYLDQ9NQC7 956 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 SEMA4GQ9NTN9 838 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 SCML2Q9UQR0 700 aa17.23■□□□□ 0.35
COL9A3-208ENST00000469802 A0A0A0MRY4 1105 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 ANTXRLA6NF34 631 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 AXIN1O15169 862 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 CETN3O15182 167 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 SLC16A3O15427 465 aaKnown RBP17.22■□□□□ 0.35
COL9A3-208ENST00000469802 CYP26A1O43174 497 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 GREM1O60565 184 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 APBB3O95704 486 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 EPB41P11171 864 aaKnown RBP17.22■□□□□ 0.35
COL9A3-208ENST00000469802 CD58P19256 250 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 SFTPA1Q8IWL2 248 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 ETFBKMTQ8IXQ9 262 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 CCDC150Q8NCX0 1101 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 FBXL13Q8NEE6 735 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 WBP2Q969T9 261 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 ZC3H10Q96K80 434 aaKnown RBP17.22■□□□□ 0.35
COL9A3-208ENST00000469802 FAM124BQ9H5Z6 455 aaPredicted RBP17.22■□□□□ 0.35
COL9A3-208ENST00000469802 TLR8Q9NR97 1041 aaKnown RBP17.22■□□□□ 0.35
COL9A3-208ENST00000469802 OSER1Q9NX31 292 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 PCDHA5Q9Y5H7 936 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.22■□□□□ 0.35
COL9A3-208ENST00000469802 THADAQ6YHU6 1953 aa17.22■□□□□ 0.35
COL9A3-208ENST00000469802 MED19A0JLT2 244 aaPredicted RBP17.21■□□□□ 0.35
COL9A3-208ENST00000469802 HOXC11O43248 304 aaPredicted RBP17.21■□□□□ 0.35
COL9A3-208ENST00000469802 STX10O60499 249 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 EPN2O95208 641 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 KAT7O95251 611 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 SLC6A11P48066 632 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 PMS1P54277 932 aaKnown RBP17.21■□□□□ 0.35
COL9A3-208ENST00000469802 LY6G5CQ5SRR4 150 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 KLHDC10Q6PID8 442 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 PRR23CQ6ZRP0 262 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 CACNA2D4Q7Z3S7 1137 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 KBTBD6Q86V97 674 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 RASSF3Q86WH2 238 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 BBS7Q8IWZ6 715 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 TTC39CQ8N584 583 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 TIGD1Q96MW7 591 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 PNKPQ96T60 521 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 ARID3AQ99856 593 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 KLF16Q9BXK1 252 aaPredicted RBP17.21■□□□□ 0.35
COL9A3-208ENST00000469802 NMUR1Q9HB89 426 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 RAB20Q9NX57 234 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 CDV3Q9UKY7 258 aaKnown RBP17.21■□□□□ 0.35
COL9A3-208ENST00000469802 MMP17Q9ULZ9 603 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 COQ4Q9Y3A0 265 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 SH3BP1Q9Y3L3 701 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 NCOR2Q9Y618 2525 aa17.21■□□□□ 0.35
COL9A3-208ENST00000469802 ABCA7Q8IZY2 2146 aa17.2■□□□□ 0.34
COL9A3-208ENST00000469802 CEP192Q8TEP8 1941 aa17.2■□□□□ 0.34
COL9A3-208ENST00000469802 CCDC192P0DO97 292 aa17.2■□□□□ 0.34
COL9A3-208ENST00000469802 ACO1P21399 889 aaKnown RBP17.2■□□□□ 0.34
COL9A3-208ENST00000469802 KIF11P52732 1056 aa17.2■□□□□ 0.34
COL9A3-208ENST00000469802 ATXN1P54253 815 aaKnown RBP17.2■□□□□ 0.34
COL9A3-208ENST00000469802 SEC13P55735 322 aa17.2■□□□□ 0.34
COL9A3-208ENST00000469802 MRPS21P82921 87 aaKnown RBP17.2■□□□□ 0.34
COL9A3-208ENST00000469802 FKBP3Q00688 224 aaKnown RBP17.2■□□□□ 0.34
COL9A3-208ENST00000469802 CBWD6Q4V339 395 aa17.2■□□□□ 0.34
COL9A3-208ENST00000469802 C2orf27AQ580R0 203 aa17.2■□□□□ 0.34
COL9A3-208ENST00000469802 CBWD3Q5JTY5 395 aa17.2■□□□□ 0.34
COL9A3-208ENST00000469802 CBWD5Q5RIA9 395 aa17.2■□□□□ 0.34
COL9A3-208ENST00000469802 PPP1R26Q5T8A7 1209 aaPredicted RBP17.2■□□□□ 0.34
COL9A3-208ENST00000469802 CCDC186Q7Z3E2 898 aa17.2■□□□□ 0.34
COL9A3-208ENST00000469802 ERCC4Q92889 916 aaPredicted RBP17.2■□□□□ 0.34
COL9A3-208ENST00000469802 JAKMIP2Q96AA8 810 aa17.2■□□□□ 0.34
COL9A3-208ENST00000469802 DUSP16Q9BY84 665 aa17.2■□□□□ 0.34
COL9A3-208ENST00000469802 CISHQ9NSE2 258 aa17.2■□□□□ 0.34
COL9A3-208ENST00000469802 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.2■□□□□ 0.34
COL9A3-208ENST00000469802 USP3Q9Y6I4 520 aa17.2■□□□□ 0.34
COL9A3-208ENST00000469802 TRIM49BA6NDI0 452 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 GOLGA6L4A6NEF3 574 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.19■□□□□ 0.34
COL9A3-208ENST00000469802 FOXD2O60548 495 aaPredicted RBP17.19■□□□□ 0.34
COL9A3-208ENST00000469802 SMC2O95347 1197 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 TBX18O95935 607 aa17.19■□□□□ 0.34
COL9A3-208ENST00000469802 KIR2DL1P43626 348 aaPredicted RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms