RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 IFNLR1Q8IU57 520 aaPredicted RBP19.9■□□□□ 0.78
VIM-203ENST00000469543 MZB1Q8WU39 189 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 SLC35F5Q8WV83 523 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 PTPRN2Q92932 1015 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 CFAP36Q96G28 342 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 TMEM237Q96Q45 408 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 SNRNP25Q9BV90 132 aaKnown RBP19.9■□□□□ 0.78
VIM-203ENST00000469543 ACSS3Q9H6R3 686 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 SPTLC1O15269 473 aa19.89■□□□□ 0.78
VIM-203ENST00000469543 PRPF4O43172 522 aaKnown RBP eCLIP19.89■□□□□ 0.78
VIM-203ENST00000469543 APRTP07741 180 aa19.89■□□□□ 0.78
VIM-203ENST00000469543 GRIA1P42261 906 aa19.89■□□□□ 0.78
VIM-203ENST00000469543 MSH2P43246 934 aa19.89■□□□□ 0.78
VIM-203ENST00000469543 RABGGTBP53611 331 aa19.89■□□□□ 0.78
VIM-203ENST00000469543 GSCP56915 257 aaPredicted RBP19.89■□□□□ 0.78
VIM-203ENST00000469543 GBE1Q04446 702 aa19.89■□□□□ 0.78
VIM-203ENST00000469543 POU5F1BQ06416 359 aa19.89■□□□□ 0.78
VIM-203ENST00000469543 SLC10A2Q12908 348 aaPredicted RBP19.89■□□□□ 0.78
VIM-203ENST00000469543 SMAD1Q15797 465 aaKnown RBP19.89■□□□□ 0.78
VIM-203ENST00000469543 SERAC1Q96JX3 654 aa19.89■□□□□ 0.78
VIM-203ENST00000469543 PIH1D1Q9NWS0 290 aaKnown RBP19.89■□□□□ 0.78
VIM-203ENST00000469543 L3MBTL1Q9Y468 752 aa19.89■□□□□ 0.78
VIM-203ENST00000469543 E7ESA3 106 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 DYNC1LI2O43237 492 aaPredicted RBP19.89■□□□□ 0.77
VIM-203ENST00000469543 MMP3P08254 477 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 HHATQ5VTY9 493 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 ADGRD1Q6QNK2 874 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 CATSPER4Q7RTX7 472 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 PYROXD2Q8N2H3 581 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 KLHL29Q96CT2 875 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 MS4A4AQ96JQ5 239 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 MYLK2Q9H1R3 596 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 PCDH18Q9HCL0 1135 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 UGT1A9O60656 530 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 BCAR1P56945 870 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 PKDCCQ504Y2 493 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 LDLRAD1Q5T700 205 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 ZNF75CPQ92670 426 aaPredicted RBP19.89■□□□□ 0.77
VIM-203ENST00000469543 UGT1A7Q9HAW7 530 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 UGT1A10Q9HAW8 530 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 UGT1A8Q9HAW9 530 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 RXFP1Q9HBX9 757 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 SLC24A2Q9UI40 661 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 DCTN4Q9UJW0 460 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 CHKBQ9Y259 395 aa19.89■□□□□ 0.77
VIM-203ENST00000469543 A8MXQ7 604 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 CXorf49A8MYA2 514 aaPredicted RBP19.88■□□□□ 0.77
VIM-203ENST00000469543 SDC4P31431 198 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 FAAP100Q0VG06 881 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 PDK4Q16654 411 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 CEP128Q6ZU80 1094 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 OTOAQ7RTW8 1153 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 CCDC125Q86Z20 511 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 LRRC8CQ8TDW0 803 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 ERP27Q96DN0 273 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 DOCK3Q8IZD9 2030 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 BPTFQ12830 3046 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 ATP6V1G2O95670 118 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 SLC6A3Q01959 620 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 RNASELQ05823 741 aaKnown RBP19.88■□□□□ 0.77
VIM-203ENST00000469543 GPR142Q7Z601 462 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 ZNF276Q8N554 614 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 OR6J1Q8NGC5 347 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 NPLOC4Q8TAT6 608 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 BRI3BPQ8WY22 251 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 ADAMTS10Q9H324 1103 aa19.88■□□□□ 0.77
VIM-203ENST00000469543 EPB41L3Q9Y2J2 1087 aaPredicted RBP19.88■□□□□ 0.77
VIM-203ENST00000469543 SYNJ2BP-COX16A0A087WUM0 186 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 CCL15-CCL14A0A0B4J2E2 113 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 TARSP26639 723 aaKnown RBP19.87■□□□□ 0.77
VIM-203ENST00000469543 PHBP35232 272 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 GRM5P41594 1212 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 NR1H3Q13133 447 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 KCNJ11Q14654 390 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 CCL15Q16663 113 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 DHX35Q9H5Z1 703 aaKnown RBP19.87■□□□□ 0.77
VIM-203ENST00000469543 PLAC1Q9HBJ0 212 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 NOD2Q9HC29 1040 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 VTA1Q9NP79 307 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 NPHS2Q9NP85 383 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 ETNK2Q9NVF9 386 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 COX16Q9P0S2 106 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 CLEC11AQ9Y240 323 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 TEX264Q9Y6I9 313 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 RECQL4O94761 1208 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 METTL18O95568 372 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 GSTA1P08263 222 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 STIP1P31948 543 aaKnown RBP19.87■□□□□ 0.77
VIM-203ENST00000469543 ACAP1Q15027 740 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 DPY19L2Q6NUT2 758 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 CTAGE3PQ8IX95 158 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 SHCBP1Q8NEM2 672 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 MAML3Q96JK9 1138 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 ETNK1Q9HBU6 452 aa19.87■□□□□ 0.77
VIM-203ENST00000469543 EDF1O60869 148 aaKnown RBP19.86■□□□□ 0.77
VIM-203ENST00000469543 GPR32O75388 356 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 NQO1P15559 274 aaKnown RBP19.86■□□□□ 0.77
VIM-203ENST00000469543 PITX1P78337 314 aaPredicted RBP19.86■□□□□ 0.77
VIM-203ENST00000469543 TMEM110Q86TL2 294 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 CAND1Q86VP6 1230 aaKnown RBP19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms