RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CBARPQ8N350 705 aaPredicted RBP5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 NAT8LQ8N9F0 302 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 NLGN4YQ8NFZ3 816 aaPredicted RBP5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 SLC30A5Q8TAD4 765 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 GSDMBQ8TAX9 411 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 DEPTORQ8TB45 409 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 TMX3Q96JJ7 454 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 LRGUKQ96M69 825 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 CCDC138Q96M89 665 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 MPHOSPH8Q99549 860 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 CHCHD3Q9NX63 227 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 NSMCE4AQ9NXX6 385 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 MTRRQ9UBK8 725 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 TRIM75PA6NK02 468 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 FZD9O00144 591 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 GRM6O15303 877 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 P4HA2O15460 535 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 SGTAO43765 313 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 AHCYL1O43865 530 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 CHRM2P08172 466 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 SBK3P0C264 359 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 ELF1P32519 619 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 LIMK1P53667 647 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 CTXN1P60606 82 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 ERVK-21P61565 698 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 SLC20A2Q08357 652 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 LRRC74AQ0VAA2 488 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 WTAPQ15007 396 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 VWA1Q6PCB0 445 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 GRASPQ7Z6J2 395 aaPredicted RBP5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 CLNKQ7Z7G1 428 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 AMIGO2Q86SJ2 522 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 NLRP14Q86W24 1093 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 IQCA1Q86XH1 822 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 CCAR2Q8N163 923 aaKnown RBP5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 SH2D3CQ8N5H7 860 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 NSUN7Q8NE18 718 aaKnown RBP5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 BRSK1Q8TDC3 778 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 LPIN2Q92539 896 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 MAML1Q92585 1016 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 USP13Q92995 863 aaPredicted RBP5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 RBM18Q96H35 190 aaKnown RBP5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 RADILQ96JH8 1075 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 TTLL2Q9BWV7 592 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 INTS13Q9NVM9 706 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 VSX1Q9NZR4 365 aaPredicted RBP5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 ZMAT5Q9UDW3 170 aaKnown RBP5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 CTNNA3Q9UI47 895 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 FBXL5Q9UKA1 691 aa5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 RRP7AQ9Y3A4 280 aaKnown RBP5.34□□□□□ -1.55
CCDC88A-210ENST00000468534 PRAMEF33A0A0G2JMD5 474 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 A6NNZ2 444 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 CTAGE5O15320 804 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 PRAMEF10O60809 474 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 PROP1O75360 226 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 AKR1B1P15121 316 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 STMN1P16949 149 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 XBP1P17861 261 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 GPD1P21695 349 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 GATA3P23771 443 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 HSPA4P34932 840 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 IL6STP40189 918 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 RECQLP46063 649 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 BTKQ06187 659 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 TARDBPQ13148 414 aaKnown RBP eCLIP5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 SCARB2Q14108 478 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 TNIP1Q15025 636 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 TAF7Q15545 349 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 MEA1Q16626 185 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 SETMARQ53H47 684 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 CCDC30Q5VVM6 783 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 B3GNT9Q6UX72 402 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 MIGA2Q7L4E1 593 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 SLC44A2Q8IWA5 706 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 CCDC191Q8NCU4 936 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 BICD2Q8TD16 824 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 ZNF606Q8WXB4 792 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 DDB2Q92466 427 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 NT5C1BQ96P26 610 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 BAG1Q99933 345 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 NCAPGQ9BPX3 1015 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 TREX2Q9BQ50 279 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 PI4K2AQ9BTU6 479 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 BRD9Q9H8M2 597 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 TRPV4Q9HBA0 871 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 FANCFQ9NPI8 374 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 TDP1Q9NUW8 608 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 IRAK4Q9NWZ3 460 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 C6orf203Q9P0P8 240 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 CFDP1Q9UEE9 299 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 GPR34Q9UPC5 381 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 AGTPBP1Q9UPW5 1226 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 ITM2BQ9Y287 266 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 LRCH1Q9Y2L9 728 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 PCDHA13Q9Y5I0 950 aa5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 EIF4G1Q04637 1599 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-210ENST00000468534 SYNJ2BP-COX16A0A087WUM0 186 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 A0A0B4J203 849 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 C17orf113A0A1B0GUU1 675 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 A0A1W2PS29 197 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms