RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 TTBK2Q6IQ55 1244 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 AMOTL1Q8IY63 956 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 ULK2Q8IYT8 1036 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 IL17RCQ8NAC3 791 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 FOXC2Q99958 501 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 COLEC11Q9BWP8 271 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 SLC29A3Q9BZD2 475 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 SMARCAD1Q9H4L7 1026 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 STARD13Q9Y3M8 1113 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 MYO5AQ9Y4I1 1855 aaKnown RBP5.56□□□□□ -1.52
HMGB1-207ENST00000468384 A0A1B0GTQ1 180 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 K7EM74 188 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 OPA1O60313 960 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 PRAMEF12O95522 483 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 ITGAVP06756 1048 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 NID1P14543 1247 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 VAV1P15498 845 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 GABRG2P18507 467 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 KLRC1P26715 233 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 TYRO3Q06418 890 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 ISXQ2M1V0 245 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 TWISTNBQ3B726 338 aaPredicted RBP5.55□□□□□ -1.52
HMGB1-207ENST00000468384 EOGTQ5NDL2 527 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 STXBP5Q5T5C0 1151 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 SDE2Q6IQ49 451 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 BTNL9Q6UXG8 535 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 LEMD2Q8NC56 503 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 C3orf58Q8NDZ4 430 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 IL31RAQ8NI17 732 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 ATXN7L3BQ96GX2 97 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 C18orf12Q96KH6 178 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 TRIM56Q9BRZ2 755 aaKnown RBP5.55□□□□□ -1.52
HMGB1-207ENST00000468384 SEPT10Q9P0V9 454 aa5.55□□□□□ -1.52
HMGB1-207ENST00000468384 EIF2B4Q9UI10 523 aaKnown RBP5.55□□□□□ -1.52
HMGB1-207ENST00000468384 GSTTP1A0A1W2PQM5 241 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 DHX15O43143 795 aaKnown RBP5.54□□□□□ -1.52
HMGB1-207ENST00000468384 PRKAB2O43741 272 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 DFNA5O60443 496 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 VTNP04004 478 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 ITGA2BP08514 1039 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 INHBBP09529 407 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 LIPCP11150 499 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 NCAM1P13591 858 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 SLC5A2P31639 672 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 QARSP47897 775 aaKnown RBP5.54□□□□□ -1.52
HMGB1-207ENST00000468384 GRIN1Q05586 938 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 ARSJQ5FYB0 599 aaPredicted RBP5.54□□□□□ -1.52
HMGB1-207ENST00000468384 GPR158Q5T848 1215 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 DCAF12L1Q5VU92 463 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 IQCEQ6IPM2 695 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 TMED8Q6PL24 325 aaPredicted RBP5.54□□□□□ -1.52
HMGB1-207ENST00000468384 JAZF1Q86VZ6 243 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 REXO1Q8N1G1 1221 aaKnown RBP5.54□□□□□ -1.52
HMGB1-207ENST00000468384 LCORLQ8N3X6 602 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 SAP25Q8TEE9 199 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 TNPO1Q92973 898 aaKnown RBP5.54□□□□□ -1.52
HMGB1-207ENST00000468384 MCCC2Q9HCC0 563 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 NEUROD4Q9HD90 331 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 CD93Q9NPY3 652 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 ASAH2Q9NR71 780 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 ATP8A2Q9NTI2 1148 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 ABI2Q9NYB9 513 aaPredicted RBP5.54□□□□□ -1.52
HMGB1-207ENST00000468384 RRN3Q9NYV6 651 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 ADAM28Q9UKQ2 775 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 ACSL6Q9UKU0 697 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 DAAM1Q9Y4D1 1078 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 KLF2Q9Y5W3 355 aaPredicted RBP5.54□□□□□ -1.52
HMGB1-207ENST00000468384 ZGRF1Q86YA3 2104 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 ZANQ9Y493 2812 aa5.54□□□□□ -1.52
HMGB1-207ENST00000468384 PRRG1O14668 218 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 ZG16O60844 167 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 ZNF623O75123 536 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 LY6G6DO95868 133 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 ABCB4P21439 1286 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 FGFR4P22455 802 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 DDX6P26196 483 aaKnown RBP eCLIP5.53□□□□□ -1.528e-6■□□□□ 9.7
HMGB1-207ENST00000468384 MSX1P28360 303 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 GSTT1P30711 240 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 CTSKP43235 329 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 IST1P53990 364 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 PER3P56645 1201 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 DSC1Q08554 894 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 ART3Q13508 389 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 PGM5Q15124 567 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 INPP5JQ15735 1006 aaPredicted RBP5.53□□□□□ -1.52
HMGB1-207ENST00000468384 CCDC96Q2M329 555 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 HSF5Q4G112 596 aaPredicted RBP5.53□□□□□ -1.52
HMGB1-207ENST00000468384 KCNT1Q5JUK3 1230 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 TWF2Q6IBS0 349 aaKnown RBP5.53□□□□□ -1.52
HMGB1-207ENST00000468384 ASB18Q6ZVZ8 466 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 CEP57Q86XR8 500 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 STK11IPQ8N1F8 1099 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 Q8NA96 180 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 CADM4Q8NFZ8 388 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 SEPT1Q8WYJ6 367 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 PGBD4Q96DM1 585 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 ZNF512Q96ME7 567 aaPredicted RBP5.53□□□□□ -1.52
HMGB1-207ENST00000468384 CATSPER2Q96P56 530 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 SPON2Q9BUD6 331 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 RSRP1Q9BUV0 290 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms