RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 C1orf220Q5T0J3 134 aa20.28■□□□□ 0.84
COL9A3-206ENST00000466532 SFTPA1Q8IWL2 248 aa20.28■□□□□ 0.84
COL9A3-206ENST00000466532 OTUB2Q96DC9 234 aa20.28■□□□□ 0.84
COL9A3-206ENST00000466532 NACA2Q9H009 215 aa20.28■□□□□ 0.84
COL9A3-206ENST00000466532 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.28■□□□□ 0.84
COL9A3-206ENST00000466532 ARHGEF4Q9NR80 690 aa20.28■□□□□ 0.84
COL9A3-206ENST00000466532 INVSQ9Y283 1065 aa20.28■□□□□ 0.84
COL9A3-206ENST00000466532 ZDHHC9Q9Y397 364 aa20.28■□□□□ 0.84
COL9A3-206ENST00000466532 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.27■□□□□ 0.84
COL9A3-206ENST00000466532 MAPK13O15264 365 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 RHOBTB3O94955 611 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 TRIM21P19474 475 aaKnown RBP20.27■□□□□ 0.84
COL9A3-206ENST00000466532 NR2F2P24468 414 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 TIE1P35590 1138 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 MAP3K7CLP57077 242 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 CREB5Q02930 508 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 GAD2Q05329 585 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 CRY1Q16526 586 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 USP39Q53GS9 565 aaKnown RBP20.27■□□□□ 0.84
COL9A3-206ENST00000466532 RASSF3Q86WH2 238 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 TTC30AQ86WT1 665 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 ALLCQ8N6M5 410 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 C12orf29Q8N999 325 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 DDX1Q92499 740 aaKnown RBP20.27■□□□□ 0.84
COL9A3-206ENST00000466532 CNOT6LQ96LI5 555 aaKnown RBP20.27■□□□□ 0.84
COL9A3-206ENST00000466532 FBXO44Q9H4M3 255 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 CSNK1G1Q9HCP0 422 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 MAPK8IP1Q9UQF2 711 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 LAMA1P25391 3075 aa20.27■□□□□ 0.84
COL9A3-206ENST00000466532 KLF8O95600 359 aaPredicted RBP20.26■□□□□ 0.83
COL9A3-206ENST00000466532 TRIM49P0CI25 452 aa20.26■□□□□ 0.83
COL9A3-206ENST00000466532 TRIM49CP0CI26 452 aa20.26■□□□□ 0.83
COL9A3-206ENST00000466532 IRF1P10914 325 aa20.26■□□□□ 0.83
COL9A3-206ENST00000466532 ADORA2BP29275 332 aa20.26■□□□□ 0.83
COL9A3-206ENST00000466532 DPYDQ12882 1025 aa20.26■□□□□ 0.83
COL9A3-206ENST00000466532 STPG1Q5TH74 334 aa20.26■□□□□ 0.83
COL9A3-206ENST00000466532 TMEM92Q6UXU6 159 aa20.26■□□□□ 0.83
COL9A3-206ENST00000466532 C11orf74Q86VG3 221 aa20.26■□□□□ 0.83
COL9A3-206ENST00000466532 BBS7Q8IWZ6 715 aa20.26■□□□□ 0.83
COL9A3-206ENST00000466532 TXNDC5Q8NBS9 432 aaKnown RBP20.26■□□□□ 0.83
COL9A3-206ENST00000466532 MDGA1Q8NFP4 955 aa20.26■□□□□ 0.83
COL9A3-206ENST00000466532 CNTNAP3BQ96NU0 1288 aa20.26■□□□□ 0.83
COL9A3-206ENST00000466532 CNTNAP3Q9BZ76 1288 aa20.26■□□□□ 0.83
COL9A3-206ENST00000466532 IMPG2Q9BZV3 1241 aa20.26■□□□□ 0.83
COL9A3-206ENST00000466532 TLR8Q9NR97 1041 aaKnown RBP20.26■□□□□ 0.83
COL9A3-206ENST00000466532 A0A0A0MRY4 1105 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 FAM237AA0A1B0GTK4 181 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 TLR5O60602 858 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 ALDH1A2O94788 518 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 FAM200BP0CF97 657 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 HNRNPLP14866 589 aaKnown RBP eCLIP20.25■□□□□ 0.83
COL9A3-206ENST00000466532 GRIA2P42262 883 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 GCLMP48507 274 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 PGFP49763 221 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 NFIL3Q16649 462 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 EMC10Q5UCC4 262 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 BTBD8Q5XKL5 378 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 PMS2CLQ68D20 193 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 TCEAL6Q6IPX3 200 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 INTS8Q75QN2 995 aaKnown RBP20.25■□□□□ 0.83
COL9A3-206ENST00000466532 NAT16Q8N8M0 369 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 IL17RCQ8NAC3 791 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 TCEAL3Q969E4 200 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 WBP2Q969T9 261 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 JAKMIP2Q96AA8 810 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 TWNKQ96RR1 684 aa20.25■□□□□ 0.83
COL9A3-206ENST00000466532 CNOT1A5YKK6 2376 aaKnown RBP20.25■□□□□ 0.83
COL9A3-206ENST00000466532 BCLAF3A2AJT9 711 aaKnown RBP20.24■□□□□ 0.83
COL9A3-206ENST00000466532 SGK1O00141 431 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 CAVIN2O95810 425 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 CHRM1P11229 460 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-206ENST00000466532 KRT13P13646 458 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 BCKDHBP21953 392 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 TNFRSF4P43489 277 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 KIR2DL1P43626 348 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-206ENST00000466532 PPP3CAQ08209 521 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 INCA1Q0VD86 236 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 ANO4Q32M45 955 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 HSF5Q4G112 596 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-206ENST00000466532 KRBA2Q6ZNG9 492 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 CLEC20AQ6ZU45 233 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 GPRIN1Q7Z2K8 1008 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 ETFBKMTQ8IXQ9 262 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 FAM186BQ8IYM0 893 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 PHTF2Q8N3S3 785 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 TAS1R2Q8TE23 839 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 HNRNPABQ99729 332 aaKnown RBP20.24■□□□□ 0.83
COL9A3-206ENST00000466532 DUSP9Q99956 384 aaKnown RBP20.24■□□□□ 0.83
COL9A3-206ENST00000466532 MMRN2Q9H8L6 949 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 APOBEC3GQ9HC16 384 aaKnown RBP20.24■□□□□ 0.83
COL9A3-206ENST00000466532 POLMQ9NP87 494 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-206ENST00000466532 ZDHHC4Q9NPG8 344 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 SPHK2Q9NRA0 654 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 PI4KAP42356 2102 aa20.24■□□□□ 0.83
COL9A3-206ENST00000466532 HOXC11O43248 304 aaPredicted RBP20.23■□□□□ 0.83
COL9A3-206ENST00000466532 TULP3O75386 442 aa20.23■□□□□ 0.83
COL9A3-206ENST00000466532 RPL13P26373 211 aaKnown RBP20.23■□□□□ 0.83
COL9A3-206ENST00000466532 PSMC2P35998 433 aaKnown RBP20.23■□□□□ 0.83
COL9A3-206ENST00000466532 EOGTQ5NDL2 527 aa20.23■□□□□ 0.83
COL9A3-206ENST00000466532 RNF43Q68DV7 783 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms