RNA–Protein interactions for RNA: ENST00000465721.1

CNOT4-208, Transcript of CCR4-NOT transcription complex subunit 4, human

TSL 4

Gene CNOT4, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT4-208	ENST00000465721	HOXB2	P14652	356 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	GAD2	Q05329	585 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	GFPT1	Q06210	699 aa	Predicted RBP	12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	ZNF33A	Q06730	810 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	IFRD2	Q12894	506 aa	Predicted RBP	12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	DUOXA2	Q1HG44	320 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	ZNF423	Q2M1K9	1284 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	TDRD10	Q5VZ19	366 aa	Known RBP	12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	SLC36A4	Q6YBV0	504 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	SV2B	Q7L1I2	683 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	WDR49	Q8IV35	697 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	SLC41A1	Q8IVJ1	513 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	PGBD3	Q8N328	593 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	DEFB119	Q8N690	84 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	TERB1	Q8NA31	727 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	KCNV2	Q8TDN2	545 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	WBP2	Q969T9	261 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	OTUB2	Q96DC9	234 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	SLITRK1	Q96PX8	696 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	DUSP9	Q99956	384 aa	Known RBP	12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	ELOVL4	Q9GZR5	314 aa		12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	DNAAF2	Q9NVR5	837 aa	Known RBP	12.52	□□□□□ -0.41
CNOT4-208	ENST00000465721	ASH1L	Q9NR48	2969 aa	Known RBP	12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721		A0A087X0B3	334 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	TBC1D3B	A6NDS4	549 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	CLDN5	O00501	218 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	ARHGAP33	O14559	1287 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	KIAA0391	O15091	583 aa	Known RBP	12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	TRIM24	O15164	1050 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	GJB3	O75712	270 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	IDE	P14735	1019 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	ATXN3	P54252	364 aa	Predicted RBP	12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	SURF1	Q15526	300 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	C8orf34	Q49A92	452 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	C10orf76	Q5T2E6	689 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	RRAGB	Q5VZM2	374 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	EGFLAM	Q63HQ2	1017 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	HS2ST1	Q7LGA3	356 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	TRAPPC11	Q7Z392	1133 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	TRMT11	Q7Z4G4	463 aa	Known RBP	12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	RABEPK	Q7Z6M1	372 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	BBS7	Q8IWZ6	715 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	NAT16	Q8N8M0	369 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	PDZD8	Q8NEN9	1154 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	OVCA2	Q8WZ82	227 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	HSPA12B	Q96MM6	686 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	CLIC6	Q96NY7	704 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	MMS19	Q96T76	1030 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	B3GNT5	Q9BYG0	378 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	CD93	Q9NPY3	652 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	HSPBP1	Q9NZL4	362 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	CCDC39	Q9UFE4	941 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	SMC3	Q9UQE7	1217 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	R3HCC1	Q9Y3T6	440 aa	Known RBP	12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	CLIC4	Q9Y696	253 aa		12.51	□□□□□ -0.41
CNOT4-208	ENST00000465721	SHROOM3	Q8TF72	1996 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721		A0A1W2PQD8	194 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	ZNF233	A6NK53	670 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	PTPN1	P18031	435 aa	Known RBP	12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	NDUFV2	P19404	249 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	YWHAQ	P27348	245 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	NTSR1	P30989	418 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	HOXD13	P35453	343 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	GNL1	P36915	607 aa	Predicted RBP	12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	WAS	P42768	502 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	TUB	P50607	506 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	SNX30	Q5VWJ9	437 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	LARP1B	Q659C4	914 aa	Known RBP	12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	TMEM25	Q86YD3	366 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	NUP93	Q8N1F7	819 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	B3GALNT2	Q8NCR0	500 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	OR6B3	Q8NGW1	331 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	FBXO32	Q969P5	355 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	CAMK1G	Q96NX5	476 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	SNX25	Q9H3E2	840 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	CCSER2	Q9H7U1	834 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	SPHK2	Q9NRA0	654 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	PANK4	Q9NVE7	773 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	DEC1	Q9P2X7	70 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	CYP8B1	Q9UNU6	501 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	STARD13	Q9Y3M8	1113 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	GPSM3	Q9Y4H4	160 aa		12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	SRPRB	Q9Y5M8	271 aa	Known RBP	12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	MUC22	E2RYF6	1773 aa	Predicted RBP	12.5	□□□□□ -0.41
CNOT4-208	ENST00000465721	FAM92A	A1XBS5	289 aa		12.49	□□□□□ -0.41
CNOT4-208	ENST00000465721	GREM1	O60565	184 aa		12.49	□□□□□ -0.41
CNOT4-208	ENST00000465721	RTN3	O95197	1032 aa	Predicted RBP	12.49	□□□□□ -0.41
CNOT4-208	ENST00000465721	CST3	P01034	146 aa	Predicted RBP	12.49	□□□□□ -0.41
CNOT4-208	ENST00000465721	ZDHHC11B	P0C7U3	371 aa		12.49	□□□□□ -0.41
CNOT4-208	ENST00000465721	TXLNA	P40222	546 aa		12.49	□□□□□ -0.41
CNOT4-208	ENST00000465721	STAT6	P42226	847 aa		12.49	□□□□□ -0.41
CNOT4-208	ENST00000465721	SLC5A3	P53794	718 aa		12.49	□□□□□ -0.41
CNOT4-208	ENST00000465721	HNRNPD	Q14103	355 aa	Known RBP	12.49	□□□□□ -0.41
CNOT4-208	ENST00000465721	BTBD8	Q5XKL5	378 aa		12.49	□□□□□ -0.41
CNOT4-208	ENST00000465721	FAM35A	Q86V20	835 aa		12.49	□□□□□ -0.41
CNOT4-208	ENST00000465721	TRIML1	Q8N9V2	468 aa		12.49	□□□□□ -0.41
CNOT4-208	ENST00000465721	SCAMP5	Q8TAC9	235 aa		12.49	□□□□□ -0.41
CNOT4-208	ENST00000465721	ADAMTS14	Q8WXS8	1223 aa		12.49	□□□□□ -0.41
CNOT4-208	ENST00000465721	HPS3	Q969F9	1004 aa		12.49	□□□□□ -0.41
CNOT4-208	ENST00000465721	ACOX2	Q99424	681 aa		12.49	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms