RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 CORO1BQ9BR76 489 aa9.19□□□□□ -0.94
COL28A1-205ENST00000453441 TRIM62Q9BVG3 475 aa9.19□□□□□ -0.94
COL28A1-205ENST00000453441 TRIM5Q9C035 493 aa9.19□□□□□ -0.94
COL28A1-205ENST00000453441 TTYH3Q9C0H2 523 aa9.19□□□□□ -0.94
COL28A1-205ENST00000453441 MIS12Q9H081 205 aa9.19□□□□□ -0.94
COL28A1-205ENST00000453441 RBSNQ9H1K0 784 aa9.19□□□□□ -0.94
COL28A1-205ENST00000453441 LHX5Q9H2C1 402 aa9.19□□□□□ -0.94
COL28A1-205ENST00000453441 NLRC4Q9NPP4 1024 aa9.19□□□□□ -0.94
COL28A1-205ENST00000453441 GDE1Q9NZC3 331 aa9.19□□□□□ -0.94
COL28A1-205ENST00000453441 IL37Q9NZH6 218 aa9.19□□□□□ -0.94
COL28A1-205ENST00000453441 DNMT3BQ9UBC3 853 aaKnown RBP9.19□□□□□ -0.94
COL28A1-205ENST00000453441 MRPS23Q9Y3D9 190 aaKnown RBP9.19□□□□□ -0.94
COL28A1-205ENST00000453441 GREB1Q4ZG55 1949 aa9.19□□□□□ -0.94
COL28A1-205ENST00000453441 NCOR1O75376 2440 aa9.19□□□□□ -0.94
COL28A1-205ENST00000453441 M0QYV0 167 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 TNFRSF10BO14763 440 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 SART1O43290 800 aaKnown RBP9.18□□□□□ -0.94
COL28A1-205ENST00000453441 CYP11B1P15538 503 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 HMGA1P17096 107 aaKnown RBP9.18□□□□□ -0.94
COL28A1-205ENST00000453441 BRD2P25440 801 aaKnown RBP9.18□□□□□ -0.94
COL28A1-205ENST00000453441 YWHAQP27348 245 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 WEE1P30291 646 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 ACADSBP45954 432 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 KLK7P49862 253 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 TUBP50607 506 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 SLC5A3P53794 718 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 MAP3K7CLP57077 242 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 ZBED6P86452 979 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 APBA1Q02410 837 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 DHX9Q08211 1270 aaKnown RBP9.18□□□□□ -0.94
COL28A1-205ENST00000453441 PDE4CQ08493 712 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 CLUL1Q15846 466 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 CCDC142Q17RM4 750 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 PRSS36Q5K4E3 855 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 TADA2BQ86TJ2 420 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 PIGZQ86VD9 579 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 TTC30AQ86WT1 665 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 TMC8Q8IU68 726 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 VSTM4Q8IW00 320 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.18□□□□□ -0.94
COL28A1-205ENST00000453441 ADHFE1Q8IWW8 467 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 TDRD5Q8NAT2 981 aaKnown RBP9.18□□□□□ -0.94
COL28A1-205ENST00000453441 STKLD1Q8NE28 680 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 ZMIZ2Q8NF64 920 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 GIPC2Q8TF65 315 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 TFAP2BQ92481 460 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 ZNF592Q92610 1267 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 MRPS31Q92665 395 aaKnown RBP9.18□□□□□ -0.94
COL28A1-205ENST00000453441 NXPE3Q969Y0 559 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 E2F7Q96AV8 911 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 CDK5RAP1Q96SZ6 601 aaKnown RBP9.18□□□□□ -0.94
COL28A1-205ENST00000453441 SMOQ99835 787 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 LPIN3Q9BQK8 851 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 APOL5Q9BWW9 433 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 LRRC3Q9BY71 257 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 PDCL3Q9H2J4 239 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 POMKQ9H5K3 350 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 LRRC4Q9HBW1 653 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 TRPM5Q9NZQ8 1165 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 AJAP1Q9UKB5 411 aaPredicted RBP9.18□□□□□ -0.94
COL28A1-205ENST00000453441 CDH7Q9ULB5 785 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 CAPN11Q9UMQ6 739 aa9.18□□□□□ -0.94
COL28A1-205ENST00000453441 LUC7L2Q9Y383 392 aaKnown RBP9.18□□□□□ -0.94
COL28A1-205ENST00000453441 BZW2Q9Y6E2 419 aaKnown RBP9.18□□□□□ -0.94
COL28A1-205ENST00000453441 ZNF638Q14966 1978 aaKnown RBP9.17□□□□□ -0.94
COL28A1-205ENST00000453441 HHLA1C9JL84 531 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 EPHB6O15197 1021 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 SOAT2O75908 522 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 FBXO21O94952 628 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 ZIC2O95409 532 aaPredicted RBP9.17□□□□□ -0.94
COL28A1-205ENST00000453441 MYL4P12829 197 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 GABRR2P28476 465 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 CDH5P33151 784 aaPredicted RBP9.17□□□□□ -0.94
COL28A1-205ENST00000453441 PRKCIP41743 596 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 GPD2P43304 727 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 RPL34P49207 117 aaKnown RBP9.17□□□□□ -0.94
COL28A1-205ENST00000453441 GPR15P49685 360 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 KIF11P52732 1056 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 CACNA2D1P54289 1103 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 CDR2Q01850 454 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 TFF2Q03403 129 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 ASIC2Q16515 512 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 RAB41Q5JT25 222 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 SFMBT2Q5VUG0 894 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 SNX30Q5VWJ9 437 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 MTSS1LQ765P7 747 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 CCDC186Q7Z3E2 898 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 SLC47A2Q86VL8 602 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 GAS2L3Q86XJ1 694 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 ZDHHC17Q8IUH5 632 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 DRC7Q8IY82 874 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 ZDHHC14Q8IZN3 488 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 SIX6OS1Q8N1H7 587 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 ZNF276Q8N554 614 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 TMEM35BQ8NCS4 154 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 IPO4Q8TEX9 1081 aaKnown RBP9.17□□□□□ -0.94
COL28A1-205ENST00000453441 SLC35F5Q8WV83 523 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 IRGQQ8WZA9 623 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 SECISBP2LQ93073 1101 aaKnown RBP9.17□□□□□ -0.94
COL28A1-205ENST00000453441 KCNK16Q96T55 309 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms