RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 GREM1O60565 184 aa21.92■■□□□ 1.1
SDC1-205ENST00000447124 SMC2O95347 1197 aa21.92■■□□□ 1.1
SDC1-205ENST00000447124 FKBP3Q00688 224 aaKnown RBP21.92■■□□□ 1.1
SDC1-205ENST00000447124 RSPO4Q2I0M5 234 aaPredicted RBP21.92■■□□□ 1.1
SDC1-205ENST00000447124 LY6G5CQ5SRR4 150 aa21.92■■□□□ 1.1
SDC1-205ENST00000447124 SYT13Q7L8C5 426 aa21.92■■□□□ 1.1
SDC1-205ENST00000447124 CAMKK1Q8N5S9 505 aa21.92■■□□□ 1.1
SDC1-205ENST00000447124 FAM160A2Q8N612 972 aaPredicted RBP21.92■■□□□ 1.1
SDC1-205ENST00000447124 CCDC150Q8NCX0 1101 aa21.92■■□□□ 1.1
SDC1-205ENST00000447124 FBXL13Q8NEE6 735 aa21.92■■□□□ 1.1
SDC1-205ENST00000447124 USP33Q8TEY7 942 aa21.92■■□□□ 1.1
SDC1-205ENST00000447124 HHIPQ96QV1 700 aa21.92■■□□□ 1.1
SDC1-205ENST00000447124 ARID3AQ99856 593 aa21.92■■□□□ 1.1
SDC1-205ENST00000447124 KLF16Q9BXK1 252 aaPredicted RBP21.92■■□□□ 1.1
SDC1-205ENST00000447124 DUSP16Q9BY84 665 aa21.92■■□□□ 1.1
SDC1-205ENST00000447124 TBC1D14Q9P2M4 693 aa21.92■■□□□ 1.1
SDC1-205ENST00000447124 TLR5O60602 858 aa21.91■■□□□ 1.1
SDC1-205ENST00000447124 CHRM1P11229 460 aaPredicted RBP21.91■■□□□ 1.1
SDC1-205ENST00000447124 CD44P16070 742 aaKnown RBP21.91■■□□□ 1.1
SDC1-205ENST00000447124 ACO1P21399 889 aaKnown RBP21.91■■□□□ 1.1
SDC1-205ENST00000447124 KIF11P52732 1056 aa21.91■■□□□ 1.1
SDC1-205ENST00000447124 SEC13P55735 322 aa21.91■■□□□ 1.1
SDC1-205ENST00000447124 DMC1Q14565 340 aa21.91■■□□□ 1.1
SDC1-205ENST00000447124 CEP68Q76N32 757 aa21.91■■□□□ 1.1
SDC1-205ENST00000447124 BBS7Q8IWZ6 715 aa21.91■■□□□ 1.1
SDC1-205ENST00000447124 ELOA2Q8IYF1 753 aaPredicted RBP21.91■■□□□ 1.1
SDC1-205ENST00000447124 SLC4A11Q8NBS3 891 aa21.91■■□□□ 1.1
SDC1-205ENST00000447124 GAB3Q8WWW8 586 aa21.91■■□□□ 1.1
SDC1-205ENST00000447124 FAXDC2Q96IV6 333 aa21.91■■□□□ 1.1
SDC1-205ENST00000447124 HEXIM2Q96MH2 286 aaKnown RBP21.91■■□□□ 1.1
SDC1-205ENST00000447124 TLR8Q9NR97 1041 aaKnown RBP21.91■■□□□ 1.1
SDC1-205ENST00000447124 CISHQ9NSE2 258 aa21.91■■□□□ 1.1
SDC1-205ENST00000447124 MAN1B1Q9UKM7 699 aa21.91■■□□□ 1.1
SDC1-205ENST00000447124 USP18Q9UMW8 372 aa21.91■■□□□ 1.1
SDC1-205ENST00000447124 COQ4Q9Y3A0 265 aa21.91■■□□□ 1.1
SDC1-205ENST00000447124 CACNA1AO00555 2505 aa21.9■■□□□ 1.1
SDC1-205ENST00000447124 A0A0A0MRY4 1105 aa21.9■■□□□ 1.1
SDC1-205ENST00000447124 CYP26A1O43174 497 aa21.9■■□□□ 1.1
SDC1-205ENST00000447124 STX10O60499 249 aa21.9■■□□□ 1.1
SDC1-205ENST00000447124 GADD45BO75293 160 aaPredicted RBP21.9■■□□□ 1.1
SDC1-205ENST00000447124 RAD23BP54727 409 aa21.9■■□□□ 1.1
SDC1-205ENST00000447124 C2orf27AQ580R0 203 aa21.9■■□□□ 1.1
SDC1-205ENST00000447124 SCD5Q86SK9 330 aa21.9■■□□□ 1.1
SDC1-205ENST00000447124 TSG101Q99816 390 aa21.9■■□□□ 1.1
SDC1-205ENST00000447124 CYLDQ9NQC7 956 aa21.9■■□□□ 1.1
SDC1-205ENST00000447124 NUDT5Q9UKK9 219 aa21.9■■□□□ 1.1
SDC1-205ENST00000447124 SH3BP1Q9Y3L3 701 aa21.9■■□□□ 1.1
SDC1-205ENST00000447124 A0A1W2PQH9 124 aa21.89■■□□□ 1.09
SDC1-205ENST00000447124 AXIN1O15169 862 aa21.89■■□□□ 1.09
SDC1-205ENST00000447124 SLC16A3O15427 465 aaKnown RBP21.89■■□□□ 1.09
SDC1-205ENST00000447124 IRF1P10914 325 aa21.89■■□□□ 1.09
SDC1-205ENST00000447124 ADH5P11766 374 aa21.89■■□□□ 1.09
SDC1-205ENST00000447124 BMP6P22004 513 aa21.89■■□□□ 1.09
SDC1-205ENST00000447124 PUM1Q14671 1186 aaKnown RBP eCLIP21.89■■□□□ 1.09
SDC1-205ENST00000447124 DCAF17Q5H9S7 520 aaPredicted RBP21.89■■□□□ 1.09
SDC1-205ENST00000447124 EMC10Q5UCC4 262 aa21.89■■□□□ 1.09
SDC1-205ENST00000447124 TCERG1LQ5VWI1 586 aa21.89■■□□□ 1.09
SDC1-205ENST00000447124 ERMP1Q7Z2K6 904 aa21.89■■□□□ 1.09
SDC1-205ENST00000447124 KBTBD6Q86V97 674 aa21.89■■□□□ 1.09
SDC1-205ENST00000447124 TMEM25Q86YD3 366 aa21.89■■□□□ 1.09
SDC1-205ENST00000447124 PHTF2Q8N3S3 785 aa21.89■■□□□ 1.09
SDC1-205ENST00000447124 TMEM176AQ96HP8 235 aa21.89■■□□□ 1.09
SDC1-205ENST00000447124 PNKPQ96T60 521 aa21.89■■□□□ 1.09
SDC1-205ENST00000447124 DUSP9Q99956 384 aaKnown RBP21.89■■□□□ 1.09
SDC1-205ENST00000447124 PNPLA8Q9NP80 782 aa21.89■■□□□ 1.09
SDC1-205ENST00000447124 USP3Q9Y6I4 520 aa21.89■■□□□ 1.09
SDC1-205ENST00000447124 MDM4O15151 490 aa21.88■■□□□ 1.09
SDC1-205ENST00000447124 RPP40O75818 363 aaKnown RBP21.88■■□□□ 1.09
SDC1-205ENST00000447124 RARGP13631 454 aa21.88■■□□□ 1.09
SDC1-205ENST00000447124 HNRNPLP14866 589 aaKnown RBP eCLIP21.88■■□□□ 1.09
SDC1-205ENST00000447124 HTR3DQ70Z44 454 aa21.88■■□□□ 1.09
SDC1-205ENST00000447124 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.88■■□□□ 1.09
SDC1-205ENST00000447124 ETFBKMTQ8IXQ9 262 aa21.88■■□□□ 1.09
SDC1-205ENST00000447124 CCDC33Q8N5R6 958 aa21.88■■□□□ 1.09
SDC1-205ENST00000447124 SLC35C1Q96A29 364 aa21.88■■□□□ 1.09
SDC1-205ENST00000447124 ACDQ96AP0 544 aa21.88■■□□□ 1.09
SDC1-205ENST00000447124 OTUB2Q96DC9 234 aa21.88■■□□□ 1.09
SDC1-205ENST00000447124 NACA2Q9H009 215 aa21.88■■□□□ 1.09
SDC1-205ENST00000447124 SEMA4GQ9NTN9 838 aa21.88■■□□□ 1.09
SDC1-205ENST00000447124 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.88■■□□□ 1.09
SDC1-205ENST00000447124 EBF1Q9UH73 591 aa21.88■■□□□ 1.09
SDC1-205ENST00000447124 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.88■■□□□ 1.09
SDC1-205ENST00000447124 DNAH14Q0VDD8 3507 aa21.88■■□□□ 1.09
SDC1-205ENST00000447124 MYO16Q9Y6X6 1858 aa21.88■■□□□ 1.09
SDC1-205ENST00000447124 MYO18AQ92614 2054 aaKnown RBP21.87■■□□□ 1.09
SDC1-205ENST00000447124 PPP1R3GB7ZBB8 358 aa21.87■■□□□ 1.09
SDC1-205ENST00000447124 KAT7O95251 611 aa21.87■■□□□ 1.09
SDC1-205ENST00000447124 ADH1CP00326 375 aa21.87■■□□□ 1.09
SDC1-205ENST00000447124 TRIM21P19474 475 aaKnown RBP21.87■■□□□ 1.09
SDC1-205ENST00000447124 ATP5C1P36542 298 aaKnown RBP21.87■■□□□ 1.09
SDC1-205ENST00000447124 EIF2DP41214 584 aaKnown RBP21.87■■□□□ 1.09
SDC1-205ENST00000447124 ATXN1P54253 815 aaKnown RBP21.87■■□□□ 1.09
SDC1-205ENST00000447124 FOXK2Q01167 660 aa21.87■■□□□ 1.09
SDC1-205ENST00000447124 GAD2Q05329 585 aa21.87■■□□□ 1.09
SDC1-205ENST00000447124 LRRC63Q05C16 580 aa21.87■■□□□ 1.09
SDC1-205ENST00000447124 ARHGAP17Q68EM7 881 aa21.87■■□□□ 1.09
SDC1-205ENST00000447124 CACNA2D4Q7Z3S7 1137 aa21.87■■□□□ 1.09
SDC1-205ENST00000447124 NAT16Q8N8M0 369 aa21.87■■□□□ 1.09
SDC1-205ENST00000447124 DHTKD1Q96HY7 919 aaPredicted RBP21.87■■□□□ 1.09
SDC1-205ENST00000447124 SPHK2Q9NRA0 654 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms