RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 PACSIN3Q9UKS6 424 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 E5RJQ4 531 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 PDE5AO76074 875 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 ALADP13716 330 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 BLMHQ13867 455 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 KCTD2Q14681 263 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 GOLGA7BQ2TAP0 167 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 CCDC14Q49A88 953 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 TMEM63BQ5T3F8 832 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 IER5Q5VY09 327 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 ASRGL1Q7L266 308 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 UCMAQ8WVF2 138 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 TRIM56Q9BRZ2 755 aaKnown RBP12.33□□□□□ -0.44
MSH6-204ENST00000445503 CSADQ9Y600 493 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 EME2A4GXA9 379 aaPredicted RBP12.33□□□□□ -0.44
MSH6-204ENST00000445503 TRPA1O75762 1119 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 ERBB2P04626 1255 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 SP2Q02086 613 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 TMEM62Q0P6H9 643 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 ASPHQ12797 758 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 IFRD2Q12894 506 aaPredicted RBP12.33□□□□□ -0.44
MSH6-204ENST00000445503 MXD4Q14582 209 aaPredicted RBP12.33□□□□□ -0.44
MSH6-204ENST00000445503 FAM47CQ5HY64 1035 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 TMEM176AQ96HP8 235 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 ASCC2Q9H1I8 757 aaPredicted RBP12.33□□□□□ -0.44
MSH6-204ENST00000445503 C2orf40Q9H1Z8 148 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 PRM3Q9NNZ6 103 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 SNCAIPQ9Y6H5 919 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 UBAP2LQ14157 1087 aaKnown RBP12.32□□□□□ -0.44
MSH6-204ENST00000445503 ADGRD1Q6QNK2 874 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 PIP4K2CQ8TBX8 421 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 PGBD4Q96DM1 585 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 FAM167AQ96KS9 214 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 PAPOLBQ9NRJ5 636 aaKnown RBP12.32□□□□□ -0.44
MSH6-204ENST00000445503 NR2E3Q9Y5X4 410 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 WASF2Q9Y6W5 498 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 TP73O15350 636 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 TBC1D12O60347 775 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 UGT1A9O60656 530 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 LGR5O75473 907 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 USP1O94782 785 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 NFICP08651 508 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 UBA1P22314 1058 aaKnown RBP12.32□□□□□ -0.44
MSH6-204ENST00000445503 SNX16P57768 344 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 TRIP10Q15642 601 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 OASLQ15646 514 aaKnown RBP12.32□□□□□ -0.44
MSH6-204ENST00000445503 ACSBG2Q5FVE4 666 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 TNFAIP8L3Q5GJ75 292 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 RNF220Q5VTB9 566 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 MPZL3Q6UWV2 235 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 TDRPQ86YL5 185 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 IGDCC3Q8IVU1 814 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 SLC7A6OSQ96CW6 309 aaPredicted RBP12.32□□□□□ -0.44
MSH6-204ENST00000445503 CNPY3Q9BT09 278 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 VCX3BQ9H321 246 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 UGT1A7Q9HAW7 530 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 UGT1A10Q9HAW8 530 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 UGT1A8Q9HAW9 530 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 TAS2R1Q9NYW7 299 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 CORO1CQ9ULV4 474 aaPredicted RBP12.32□□□□□ -0.44
MSH6-204ENST00000445503 GOLGB1Q14789 3259 aaKnown RBP12.32□□□□□ -0.44
MSH6-204ENST00000445503 SPDYE5A6NIY4 337 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 A8MXQ7 604 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 ATP9BO43861 1147 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 ABCG1P45844 678 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 NDST1P52848 882 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 SLC25A3Q00325 362 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 NME3Q13232 169 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 GLRA4Q5JXX5 417 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 PID1Q7Z2X4 250 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.32□□□□□ -0.44
MSH6-204ENST00000445503 MAB21L3Q8N8X9 362 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 C12orf29Q8N999 325 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 PYDC1Q8WXC3 89 aa12.32□□□□□ -0.44
MSH6-204ENST00000445503 KLHL8Q9P2G9 620 aaPredicted RBP12.32□□□□□ -0.44
MSH6-204ENST00000445503 NHSL1Q5SYE7 1610 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 PPP1R12AO14974 1030 aaPredicted RBP12.31□□□□□ -0.44
MSH6-204ENST00000445503 DGKIO75912 1065 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 STAG3L1P0CL83 205 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 FSTL1Q12841 308 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 MOGSQ13724 837 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 CDKL3Q8IVW4 592 aaPredicted RBP12.31□□□□□ -0.44
MSH6-204ENST00000445503 BANPQ8N9N5 519 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 SLC35B2Q8TB61 432 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 DENND1AQ8TEH3 1009 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 MED10Q9BTT4 135 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 HAPLN2Q9GZV7 340 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 INPP5FQ9Y2H2 1132 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 LRCH1Q9Y2L9 728 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 CNTNAP1P78357 1384 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 COL16A1Q07092 1604 aaPredicted RBP12.31□□□□□ -0.44
MSH6-204ENST00000445503 SPAG6O75602 509 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 LYPLA1O75608 230 aaPredicted RBP12.31□□□□□ -0.44
MSH6-204ENST00000445503 ZMPSTE24O75844 475 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 TRUB2O95900 331 aaKnown RBP12.31□□□□□ -0.44
MSH6-204ENST00000445503 GARSP41250 739 aaKnown RBP12.31□□□□□ -0.44
MSH6-204ENST00000445503 TMEM132DQ14C87 1099 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 ZNF354CQ86Y25 554 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 SH3GL3Q99963 347 aa12.31□□□□□ -0.44
MSH6-204ENST00000445503 TSPAN16Q9UKR8 245 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms