RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 MIEF1Q9NQG6 463 aa12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 EIF3LQ9Y262 564 aaKnown RBP12.45□□□□□ -0.42
CCDC88A-207ENST00000436346 CRTAMO95727 393 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 CENPCQ03188 943 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 SIX5Q8N196 739 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 ARMC2Q8NEN0 867 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 SDR42E2A6NKP2 422 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 ATP6V1C1P21283 382 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 TRIM28Q13263 835 aaKnown RBP12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 GMCL1P1Q8NEA9 526 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 PDGFDQ9GZP0 370 aaPredicted RBP12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 TRIP12Q14669 1992 aaPredicted RBP12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 CSDE1O75534 798 aaKnown RBP12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 FBXO21O94952 628 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 AMHP03971 560 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 RRM2P31350 389 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 ANXA11P50995 505 aaKnown RBP12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 GRIK4Q16099 956 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 VN1R5Q7Z5H4 357 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 IFNLR1Q8IU57 520 aaPredicted RBP12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 STAMBPL1Q96FJ0 436 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 DEPDC7Q96QD5 511 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 USP31Q70CQ4 1352 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 ARHGAP17Q68EM7 881 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 LAYNQ6UX15 382 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 RD3Q7Z3Z2 195 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 CSGALNACT1Q8TDX6 532 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 CELF4Q9BZC1 486 aaKnown RBP12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 GLRBP48167 497 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 RABL6Q3YEC7 729 aaPredicted RBP12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 SLC47A2Q86VL8 602 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 CHST12Q9NRB3 414 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 A0A087WZ62 844 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 TMEM120BA0PK00 339 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 KLHL2O95198 593 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 NUDT2P50583 147 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 DNAL1Q4LDG9 190 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 TRIM69Q86WT6 500 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 ADSSL1Q8N142 457 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 MYO1HQ8N1T3 1032 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 VPS33BQ9H267 617 aa12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 USP15Q9Y4E8 981 aaPredicted RBP12.44□□□□□ -0.42
CCDC88A-207ENST00000436346 GPR75-ASB3A0A0A6YYF3 556 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 C16orf96A6NNT2 1141 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 POMCP01189 267 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 BBS7Q8IWZ6 715 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 CENPLQ8N0S6 344 aaPredicted RBP12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 GEMIN8Q9NWZ8 242 aaKnown RBP12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 VANGL2Q9ULK5 521 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 AGRPO00253 132 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 MTA2O94776 668 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 RASGRP2Q7LDG7 609 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 TLK2Q86UE8 772 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 PPIEQ9UNP9 301 aaKnown RBP12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 SCN11AQ9UI33 1791 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 XYLBO75191 536 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 GARTP22102 1010 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 GTF2E2P29084 291 aaKnown RBP12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 GRK4P32298 578 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 SLC15A2Q16348 729 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 FNDC3BQ53EP0 1204 aaKnown RBP12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 PCNX4Q63HM2 1172 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 GJB7Q6PEY0 223 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 TMC7Q7Z402 723 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 FBXO33Q7Z6M2 555 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 JAMLQ86YT9 394 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 SMARCD1Q96GM5 515 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 RANBP17Q9H2T7 1088 aaKnown RBP12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 RIC1Q4ADV7 1423 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 FGFR1P11362 822 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 CCDC81Q6ZN84 652 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 TFAP2DQ7Z6R9 452 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 COMMD2Q86X83 199 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 CD302Q8IX05 232 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 ASCC2Q9H1I8 757 aaPredicted RBP12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 MTO1Q9Y2Z2 717 aaKnown RBP12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 NR1I3Q14994 352 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 TSGA10IPQ3SY00 556 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 FAM171A1Q5VUB5 890 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 KIAA2013Q8IYS2 634 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 RIN3Q8TB24 985 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 SGF29Q96ES7 293 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 PAPOLBQ9NRJ5 636 aaKnown RBP12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 ITGA11Q9UKX5 1188 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 SPAG17Q6Q759 2223 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 ZNF682O95780 498 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 CYP11B1P15538 503 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 ALDH9A1P49189 494 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 SCNN1BP51168 640 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 RHOAP61586 193 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 FAM172AQ8WUF8 416 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 CNBD2Q96M20 576 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 EPC1Q9H2F5 836 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 NRXN1Q9ULB1 1477 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 ABCB1P08183 1280 aaPredicted RBP12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 TOMM20Q15388 145 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 LY6KQ17RY6 165 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 B3GALNT2Q8NCR0 500 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 SPATC1LQ9H0A9 340 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 TRPM5Q9NZQ8 1165 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms