RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 NT5C1AQ9BXI3 368 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 CNOT10Q9H9A5 744 aaKnown RBP8.73□□□□□ -1.01
CD44-208ENST00000428726 HOMER3Q9NSC5 361 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 PRMT7Q9NVM4 692 aaPredicted RBP8.73□□□□□ -1.01
CD44-208ENST00000428726 WHRNQ9P202 907 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.73□□□□□ -1.01
CD44-208ENST00000428726 TNFSF13BQ9Y275 285 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 A0A0G2JMZ2 1700 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 ASB14A6NK59 587 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 CYB561D2O14569 222 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 GAS2O43903 313 aaKnown RBP8.73□□□□□ -1.01
CD44-208ENST00000428726 PFKMP08237 780 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 GOT1P17174 413 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 CXCR3P49682 368 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 ZNF132P52740 706 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 CACNA2D1P54289 1103 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 ARPP19P56211 112 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 YWHAEP62258 255 aaKnown RBP8.73□□□□□ -1.01
CD44-208ENST00000428726 ADIGQ0VDE8 80 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 SURF1Q15526 300 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 CCNG2Q16589 344 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 SYPL2Q5VXT5 272 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 ZCCHC23Q6ZST2 131 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 PLPPR4Q7Z2D5 763 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 CCDC91Q7Z6B0 441 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 PARP9Q8IXQ6 854 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 CCDC63Q8NA47 563 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 C3orf20Q8ND61 904 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 EXD1Q8NHP7 514 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 ATXN2LQ8WWM7 1075 aaKnown RBP8.73□□□□□ -1.01
CD44-208ENST00000428726 CPT1BQ92523 772 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 P3H4Q92791 437 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 TLCD1Q96CP7 247 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 STAMBPL1Q96FJ0 436 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 WDR83Q9BRX9 315 aaKnown RBP8.73□□□□□ -1.01
CD44-208ENST00000428726 MROH8Q9H579 483 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 MGAMO43451 1857 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 PTPRFP10586 1907 aa8.73□□□□□ -1.01
CD44-208ENST00000428726 IGKV6-21A0A0C4DH24 114 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 PSTPIP1O43586 416 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 SRGAP2BP0DMP2 458 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 ITIH2P19823 946 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 ADRA1DP25100 572 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 GPX6P59796 221 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 SLC25A11Q02978 314 aaKnown RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 HIF1AQ16665 826 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 DGKDQ16760 1214 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 CCDC14Q49A88 953 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 C6orf118Q5T5N4 469 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 CDCA2Q69YH5 1023 aaPredicted RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 DENND5BQ6ZUT9 1274 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 KATNAL2Q8IYT4 538 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 RCOR2Q8IZ40 523 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 CELF6Q96J87 481 aaKnown RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 SNRNP25Q9BV90 132 aaKnown RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 SHCBP1LQ9BZQ2 653 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 MIOSQ9NXC5 875 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 MYO9BQ13459 2157 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 GOLGA8CPA6NN73 597 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 CXorf49A8MYA2 514 aaPredicted RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 UBOX5O94941 541 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 CPP00450 1065 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 PAEPP09466 180 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 GHRP10912 638 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 TPH1P17752 444 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 KLRC2P26717 231 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 GNL1P36915 607 aaPredicted RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 BRCC3P46736 316 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 CPA2P48052 419 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 VCPP55072 806 aaKnown RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 WDR4P57081 412 aaKnown RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 CCNA1P78396 465 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 AP1B1Q10567 949 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 SLC10A2Q12908 348 aaPredicted RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 PTK6Q13882 451 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 HADHQ16836 314 aaKnown RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 NBPF20Q3BBV1 942 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 ERMARDQ5T6L9 678 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 MROH9Q5TGP6 573 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 SMYD5Q6GMV2 418 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 TRMT10BQ6PF06 316 aaKnown RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 PLEKHH3Q7Z736 793 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 TMEM109Q9BVC6 243 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 C2orf40Q9H1Z8 148 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 ATXN3LQ9H3M9 355 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 TMEM30AQ9NV96 361 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 HESX1Q9UBX0 185 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 KCNH4Q9UQ05 1017 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 ATXN2Q99700 1313 aaKnown RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 TRIOO75962 3097 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 WDR87Q6ZQQ6 2873 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 SMIM28A0A1B0GU29 152 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 TTC24A2A3L6 582 aaPredicted RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 KBTBD13C9JR72 458 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 B4GALT4O60513 344 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 LGR5O75473 907 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 MOCS2O96007 188 aaPredicted RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 CTGFP29279 349 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 GBP2P32456 591 aaPredicted RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms