RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 CYB561D2O14569 222 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 ATP2C2O75185 946 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 FAM163BP0C2L3 166 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 IGFBP6P24592 240 aaPredicted RBP20.99■□□□□ 0.95
USP39-204ENST00000409766 FCGRTP55899 365 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 HIF1AQ16665 826 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 HP1BP3Q5SSJ5 553 aaPredicted RBP20.99■□□□□ 0.95
USP39-204ENST00000409766 DARS2Q6PI48 645 aaKnown RBP20.99■□□□□ 0.95
USP39-204ENST00000409766 SERINC5Q86VE9 423 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 ZC3H18Q86VM9 953 aaKnown RBP20.99■□□□□ 0.95
USP39-204ENST00000409766 ZBED8Q8IZ13 594 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 FUKQ8N0W3 1084 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 PCDH19Q8TAB3 1148 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 ZIC5Q96T25 663 aa20.99■□□□□ 0.95
USP39-204ENST00000409766 ZNF487B1APH4 448 aa20.98■□□□□ 0.95
USP39-204ENST00000409766 GOLGA8MH3BSY2 632 aa20.98■□□□□ 0.95
USP39-204ENST00000409766 GABRDO14764 452 aa20.98■□□□□ 0.95
USP39-204ENST00000409766 XPO1O14980 1071 aaKnown RBP20.98■□□□□ 0.95
USP39-204ENST00000409766 CREB1P16220 341 aa20.98■□□□□ 0.95
USP39-204ENST00000409766 NKX3-2P78367 333 aa20.98■□□□□ 0.95
USP39-204ENST00000409766 GAD2Q05329 585 aa20.98■□□□□ 0.95
USP39-204ENST00000409766 PDIA2Q13087 525 aaKnown RBP20.98■□□□□ 0.95
USP39-204ENST00000409766 SLC9A4Q6AI14 798 aa20.98■□□□□ 0.95
USP39-204ENST00000409766 FAF2Q96CS3 445 aa20.98■□□□□ 0.95
USP39-204ENST00000409766 ZNF670Q9BS34 389 aa20.98■□□□□ 0.95
USP39-204ENST00000409766 TSPYL2Q9H2G4 693 aaPredicted RBP20.98■□□□□ 0.95
USP39-204ENST00000409766 CHST12Q9NRB3 414 aa20.98■□□□□ 0.95
USP39-204ENST00000409766 C5orf60A6NFR6 353 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 TGM2P21980 687 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 RDXP35241 583 aaKnown RBP20.97■□□□□ 0.95
USP39-204ENST00000409766 NRLP54845 237 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 WSCD1Q658N2 575 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 C1orf228Q6PIY5 440 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 SPATS2Q86XZ4 545 aaKnown RBP20.97■□□□□ 0.95
USP39-204ENST00000409766 RIBC1Q8N443 379 aaPredicted RBP20.97■□□□□ 0.95
USP39-204ENST00000409766 ZNF317Q96PQ6 595 aaPredicted RBP20.97■□□□□ 0.95
USP39-204ENST00000409766 DUSP16Q9BY84 665 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 CCDC134Q9H6E4 229 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 SPC25Q9HBM1 224 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 SLC38A7Q9NVC3 462 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 FAM169AQ9Y6X4 670 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 FOXO6A8MYZ6 492 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 SMAPO00193 183 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 APOL1O14791 398 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 SEPT4O43236 478 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 CTSHP09668 335 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 RARBP10826 455 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 PTPN1P18031 435 aaKnown RBP20.97■□□□□ 0.95
USP39-204ENST00000409766 GCAP28676 217 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 MLH1P40692 756 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 FLT3LGP49771 235 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 AFF1P51825 1210 aaKnown RBP20.97■□□□□ 0.95
USP39-204ENST00000409766 DPYSL2Q16555 572 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 QPCTQ16769 361 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 VSTM1Q6UX27 236 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 PAQR9Q6ZVX9 377 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 PIGZQ86VD9 579 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 CHMP6Q96FZ7 201 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 USP29Q9HBJ7 922 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 TBK1Q9UHD2 729 aa20.97■□□□□ 0.95
USP39-204ENST00000409766 TCRBV7S3A2A0A539 114 aa20.96■□□□□ 0.95
USP39-204ENST00000409766 TMEM63AO94886 807 aa20.96■□□□□ 0.95
USP39-204ENST00000409766 ACAT1P24752 427 aaKnown RBP20.96■□□□□ 0.95
USP39-204ENST00000409766 L1CAMP32004 1257 aa20.96■□□□□ 0.95
USP39-204ENST00000409766 ATXN1P54253 815 aaKnown RBP20.96■□□□□ 0.95
USP39-204ENST00000409766 ARL4CP56559 192 aa20.96■□□□□ 0.95
USP39-204ENST00000409766 BCAR1P56945 870 aa20.96■□□□□ 0.95
USP39-204ENST00000409766 MGAT3Q09327 533 aa20.96■□□□□ 0.95
USP39-204ENST00000409766 FNBP1LQ5T0N5 605 aa20.96■□□□□ 0.95
USP39-204ENST00000409766 RPAINQ86UA6 219 aa20.96■□□□□ 0.95
USP39-204ENST00000409766 CCDC13Q8IYE1 715 aa20.96■□□□□ 0.95
USP39-204ENST00000409766 GAD1Q99259 594 aa20.96■□□□□ 0.95
USP39-204ENST00000409766 CACNG4Q9UBN1 327 aa20.96■□□□□ 0.95
USP39-204ENST00000409766 GGA2Q9UJY4 613 aa20.96■□□□□ 0.95
USP39-204ENST00000409766 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.95■□□□□ 0.94
USP39-204ENST00000409766 EXOC1LA0A1B0GW35 172 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 TMEM120BA0PK00 339 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 E7ESA3 106 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 H7C0C1 242 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 MYO1CO00159 1063 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 BANF1O75531 89 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 DRD4P21917 467 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 ATP5OP48047 213 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 TRIM32Q13049 653 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 MSS51Q4VC12 460 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 PPP6R3Q5H9R7 873 aaPredicted RBP20.95■□□□□ 0.94
USP39-204ENST00000409766 EFHC1Q5JVL4 640 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 TDRPQ86YL5 185 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 HACE1Q8IYU2 909 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 TAB3Q8N5C8 712 aaPredicted RBP20.95■□□□□ 0.94
USP39-204ENST00000409766 MAML1Q92585 1016 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 PRMT1Q99873 361 aaKnown RBP20.95■□□□□ 0.94
USP39-204ENST00000409766 MIOSQ9NXC5 875 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.95■□□□□ 0.94
USP39-204ENST00000409766 CLDN5O00501 218 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 ADAMTS4O75173 837 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 THP07101 528 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 NPR3P17342 541 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 MATKP42679 507 aa20.95■□□□□ 0.94
USP39-204ENST00000409766 CORO7P57737 925 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms