RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 HCSTQ9UBK5 93 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 SNX24Q9Y343 169 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 HES2Q9Y543 173 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 IPPQ9Y573 584 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 NUB1Q9Y5A7 615 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 NFS1Q9Y697 457 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 PLXNA4Q9HCM2 1894 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 CACNA1BQ00975 2339 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 EP300Q09472 2414 aaPredicted RBP13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 STK25O00506 426 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 ABLIM1O14639 778 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 KRT37O76014 449 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 PAEPP09466 180 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 RARAP10276 462 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 CDH5P33151 784 aaPredicted RBP13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 MDH1P40925 334 aaKnown RBP13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 PTK6Q13882 451 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 ZNF699Q32M78 642 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 KRT71Q3SY84 523 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 PDE12Q6L8Q7 609 aaKnown RBP13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 MRPL10Q7Z7H8 261 aaKnown RBP13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 CCDC50Q8IVM0 306 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 KIAA2013Q8IYS2 634 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 CRIPAKQ8N1N5 446 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 UBR7Q8N806 425 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 CCDC89Q8N998 374 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 COLGALT1Q8NBJ5 622 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 SMG8Q8ND04 991 aaKnown RBP13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 OR5B17Q8NGF7 314 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 BCAS4Q8TDM0 211 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 ART4Q93070 314 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 RMDN1Q96DB5 314 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 PGBD4Q96DM1 585 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 C18orf8Q96DM3 657 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 FAM212AQ96EL1 285 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 SNF8Q96H20 258 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 TCF25Q9BQ70 676 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 C11orf70Q9BRQ4 267 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 TXLNGYQ9BZA5 131 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 CDT1Q9H211 546 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 LHX5Q9H2C1 402 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 CENPHQ9H3R5 247 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 NXF3Q9H4D5 531 aaKnown RBP13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 POMKQ9H5K3 350 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 CYP3A43Q9HB55 503 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 APOBEC3GQ9HC16 384 aaKnown RBP13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 TMEM161AQ9NX61 479 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 ATP8A1Q9Y2Q0 1164 aa13.54□□□□□ -0.24
SMARCB1-203ENST00000407082 HIDE1A8MVS5 230 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 TJP3O95049 919 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 HOXB8P17481 243 aaPredicted RBP13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 DESP17661 470 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 MMP8P22894 467 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 CLCN5P51795 746 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 SNX16P57768 344 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 OSTNP61366 133 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 PPP2R2AP63151 447 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 TFAMQ00059 246 aaKnown RBP13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 ZNF844Q08AG5 666 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 MAMLD1Q13495 774 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 TRADDQ15628 312 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 UAP1Q16222 522 aaPredicted RBP13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 ZNF667Q5HYK9 610 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 SPOPLQ6IQ16 392 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 DNAJC24Q6P3W2 148 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 DCUN1D2Q6PH85 259 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 TMEM184AQ6ZMB5 413 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 TAOK1Q7L7X3 1001 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 TMC7Q7Z402 723 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 ZNF598Q86UK7 904 aaKnown RBP13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 ERICH1Q86X53 443 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 HACE1Q8IYU2 909 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 LPPQ93052 612 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 PGM2Q96G03 612 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 BTBD6Q96KE9 485 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 CCDC77Q9BR77 488 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 APOL6Q9BWW8 343 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 DCLK3Q9C098 648 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 EPN3Q9H201 632 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 NEUROG2Q9H2A3 272 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 RNF39Q9H2S5 420 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 ACP6Q9NPH0 428 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 CISHQ9NSE2 258 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 BCCIPQ9P287 314 aaKnown RBP eCLIP13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 GGA2Q9UJY4 613 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 KIAA1257Q9ULG3 409 aa13.53□□□□□ -0.24
SMARCB1-203ENST00000407082 PI15O43692 258 aa13.52□□□□□ -0.25
SMARCB1-203ENST00000407082 FAM189A1O60320 539 aa13.52□□□□□ -0.25
SMARCB1-203ENST00000407082 AGTP01019 485 aa13.52□□□□□ -0.25
SMARCB1-203ENST00000407082 FGFR1P11362 822 aa13.52□□□□□ -0.25
SMARCB1-203ENST00000407082 ATF2P15336 505 aa13.52□□□□□ -0.25
SMARCB1-203ENST00000407082 AKAP5P24588 427 aa13.52□□□□□ -0.25
SMARCB1-203ENST00000407082 PTPN7P35236 360 aa13.52□□□□□ -0.25
SMARCB1-203ENST00000407082 SSR1P43307 286 aaKnown RBP13.52□□□□□ -0.25
SMARCB1-203ENST00000407082 RPL21P46778 160 aaKnown RBP13.52□□□□□ -0.25
SMARCB1-203ENST00000407082 MARCKSL1P49006 195 aa13.52□□□□□ -0.25
SMARCB1-203ENST00000407082 MYL6P60660 151 aa13.52□□□□□ -0.25
SMARCB1-203ENST00000407082 ACAP1Q15027 740 aa13.52□□□□□ -0.25
SMARCB1-203ENST00000407082 ANGPT1Q15389 498 aa13.52□□□□□ -0.25
SMARCB1-203ENST00000407082 STILQ15468 1287 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms