RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 E7ENQ6 273 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 CAPN9O14815 690 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 LTFP02788 710 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 HNRNPA1P09651 372 aaKnown RBP eCLIP18.95■□□□□ 0.62
SDC1-203ENST00000403076 YWHAZP63104 245 aaKnown RBP18.95■□□□□ 0.62
SDC1-203ENST00000403076 RBM10P98175 930 aaKnown RBP18.95■□□□□ 0.62
SDC1-203ENST00000403076 MON1AQ86VX9 555 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 ARHGAP18Q8N392 663 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 CASP10Q92851 521 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 PSMG2Q969U7 264 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 TTLL2Q9BWV7 592 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 ASNSD1Q9NWL6 643 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 GMIPQ9P107 970 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 UXTQ9UBK9 157 aaPredicted RBP18.95■□□□□ 0.62
SDC1-203ENST00000403076 ANAPC7Q9UJX3 599 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 HSF2BPO75031 334 aa18.94■□□□□ 0.62
SDC1-203ENST00000403076 XYLBO75191 536 aa18.94■□□□□ 0.62
SDC1-203ENST00000403076 GLI1P08151 1106 aa18.94■□□□□ 0.62
SDC1-203ENST00000403076 SRGAP2BP0DMP2 458 aa18.94■□□□□ 0.62
SDC1-203ENST00000403076 HMGA1P17096 107 aaKnown RBP18.94■□□□□ 0.62
SDC1-203ENST00000403076 RFC1P35251 1148 aaPredicted RBP18.94■□□□□ 0.62
SDC1-203ENST00000403076 YWHAGP61981 247 aaKnown RBP eCLIP18.94■□□□□ 0.62
SDC1-203ENST00000403076 RPL7AP62424 266 aaKnown RBP18.94■□□□□ 0.62
SDC1-203ENST00000403076 HYAL1Q12794 435 aa18.94■□□□□ 0.62
SDC1-203ENST00000403076 BTBD8Q5XKL5 378 aa18.94■□□□□ 0.62
SDC1-203ENST00000403076 HFE2Q6ZVN8 426 aa18.94■□□□□ 0.62
SDC1-203ENST00000403076 RNF10Q8N5U6 811 aaKnown RBP18.94■□□□□ 0.62
SDC1-203ENST00000403076 EMC1Q8N766 993 aa18.94■□□□□ 0.62
SDC1-203ENST00000403076 JOSD2Q8TAC2 188 aa18.94■□□□□ 0.62
SDC1-203ENST00000403076 TLR8Q9NR97 1041 aaKnown RBP18.94■□□□□ 0.62
SDC1-203ENST00000403076 ZDHHC7Q9NXF8 308 aa18.94■□□□□ 0.62
SDC1-203ENST00000403076 SALL4Q9UJQ4 1053 aa18.94■□□□□ 0.62
SDC1-203ENST00000403076 COG5Q9UP83 839 aa18.94■□□□□ 0.62
SDC1-203ENST00000403076 MTCH2Q9Y6C9 303 aa18.94■□□□□ 0.62
SDC1-203ENST00000403076 A0A1W2PQH9 124 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 TMEM191CA6NGB0 347 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 TMEM110-MUSTN1A8MSY1 372 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 MYO1FO00160 1098 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 MOCS3O95396 460 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 TCEAL1Q15170 157 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 PPP1R15BQ5SWA1 713 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 BSPRYQ5W0U4 402 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 MICALL1Q8N3F8 863 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 EFHBQ8N7U6 833 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 PDZD8Q8NEN9 1154 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 TRMT2BQ96GJ1 504 aaKnown RBP18.93■□□□□ 0.62
SDC1-203ENST00000403076 CORO1BQ9BR76 489 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 TRIM62Q9BVG3 475 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 PIDD1Q9HB75 910 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 POPDC2Q9HBU9 364 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 DZANK1Q9NVP4 752 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.93■□□□□ 0.62
SDC1-203ENST00000403076 TMEM59LQ9UK28 342 aa18.93■□□□□ 0.62
SDC1-203ENST00000403076 PATJQ8NI35 1801 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 MTCL1Q9Y4B5 1905 aaKnown RBP18.92■□□□□ 0.62
SDC1-203ENST00000403076 CCDC195A0A1B0GUA6 201 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 FAM92AA1XBS5 289 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 DAB1O75553 588 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 MTA2O94776 668 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 PDGFRAP16234 1089 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 PTPN2P17706 415 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 GPD1P21695 349 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 HOXA9P31269 272 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 FLT3P36888 993 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 ADGRE1Q14246 886 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 MESDQ14696 234 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 DCAF6Q58WW2 860 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 DEFB106AQ8N104 65 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 VN1R2Q8NFZ6 395 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 RXFP2Q8WXD0 754 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 EDEM1Q92611 657 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 KHSRPQ92945 711 aaKnown RBP eCLIP18.92■□□□□ 0.62
SDC1-203ENST00000403076 BTBD6Q96KE9 485 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 CALR3Q96L12 384 aaKnown RBP18.92■□□□□ 0.62
SDC1-203ENST00000403076 MYRFLQ96LU7 910 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 TRIM7Q9C029 511 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 ABCC13Q9NSE7 274 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 TRPM5Q9NZQ8 1165 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 ATG2AQ2TAZ0 1938 aa18.92■□□□□ 0.62
SDC1-203ENST00000403076 KIF5CO60282 957 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 RALAP11233 206 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 MYL4P12829 197 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 NCAM1P13591 858 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 DESP17661 470 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 PSMA2P25787 234 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 SDC4P31431 198 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 PSEN1P49768 467 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 EP400NLQ6ZTU2 488 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 BHLHA9Q7RTU4 235 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 SCD5Q86SK9 330 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 C12orf76Q8N812 135 aaPredicted RBP18.91■□□□□ 0.62
SDC1-203ENST00000403076 TPCN2Q8NHX9 752 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 RNF139Q8WU17 664 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 OVCA2Q8WZ82 227 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 PRKD2Q9BZL6 878 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 SFXN1Q9H9B4 322 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 NMUR1Q9HB89 426 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 ASAH2Q9NR71 780 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 IP6K2Q9UHH9 426 aa18.91■□□□□ 0.62
SDC1-203ENST00000403076 NAALADL1Q9UQQ1 740 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms