RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 RHOBTB2Q9BYZ6 727 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 TSPYL1Q9H0U9 437 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 RAB6BQ9NRW1 208 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 TRMT13Q9NUP7 481 aaKnown RBP11.62□□□□□ -0.55
TCOF1-203ENST00000394269 FAM105AQ9NUU6 356 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 NAALADL1Q9UQQ1 740 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 PLXNB2O15031 1838 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 HAS3O00219 553 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 THP07101 528 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 BRAFP15056 766 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 GABRB2P47870 512 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 FCGRTP55899 365 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 DPYSL3Q14195 570 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 ZKSCAN8Q15776 578 aaPredicted RBP11.61□□□□□ -0.55
TCOF1-203ENST00000394269 QPCTQ16769 361 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 TAF2Q6P1X5 1199 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 CENPUQ71F23 418 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 TAOK1Q7L7X3 1001 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 DEFB106AQ8N104 65 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 SIX6OS1Q8N1H7 587 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 TTC39CQ8N584 583 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 FAF2Q96CS3 445 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 TNIP3Q96KP6 325 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 SENP8Q96LD8 212 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 BEGAINQ9BUH8 593 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 XPO7Q9UIA9 1087 aaKnown RBP11.61□□□□□ -0.55
TCOF1-203ENST00000394269 PLXNA1Q9UIW2 1896 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 TMEM120BA0PK00 339 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 RASA4BC9J798 803 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 RASA4O43374 803 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 CSPG5O95196 566 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 CHRNA1P02708 482 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 RBL1P28749 1068 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 AXLP30530 894 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 RDXP35241 583 aaKnown RBP11.61□□□□□ -0.55
TCOF1-203ENST00000394269 BCAT1P54687 386 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 STILQ15468 1287 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 C4orf33Q8N1A6 199 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 TTC13Q8NBP0 860 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 SLC35B2Q8TB61 432 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 THOC1Q96FV9 657 aaKnown RBP11.61□□□□□ -0.55
TCOF1-203ENST00000394269 PGM2Q96G03 612 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 KLF6Q99612 283 aaPredicted RBP11.61□□□□□ -0.55
TCOF1-203ENST00000394269 KIF9Q9HAQ2 790 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 PIH1D1Q9NWS0 290 aaKnown RBP11.61□□□□□ -0.55
TCOF1-203ENST00000394269 SEPT10Q9P0V9 454 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 CHMP2BQ9UQN3 213 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 FAM169AQ9Y6X4 670 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 GOLGA8RI6L899 631 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 APOC4-APOC2K7ER74 178 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 KIAA0754O94854 1291 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 ZBED1O96006 694 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 AGTP01019 485 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 APOC2P02655 101 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 ITGAVP06756 1048 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 PRKAR2AP13861 404 aaKnown RBP11.61□□□□□ -0.55
TCOF1-203ENST00000394269 PTPN1P18031 435 aaKnown RBP11.61□□□□□ -0.55
TCOF1-203ENST00000394269 LIG3P49916 1009 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 HDAC4P56524 1084 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 CACNB2Q08289 660 aaPredicted RBP11.61□□□□□ -0.55
TCOF1-203ENST00000394269 SREBF2Q12772 1141 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 FNBP1LQ5T0N5 605 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 C3orf62Q6ZUJ4 267 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 TMEM110Q86TL2 294 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 NME8Q8N427 588 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 ZCCHC9Q8N567 271 aaKnown RBP11.61□□□□□ -0.55
TCOF1-203ENST00000394269 CCDC185Q8N715 623 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 CCDC110Q8TBZ0 833 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 USP6NLQ92738 828 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 TLCD1Q96CP7 247 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 XPO6Q96QU8 1125 aaKnown RBP11.61□□□□□ -0.55
TCOF1-203ENST00000394269 TBCBQ99426 244 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 STMN4Q9H169 189 aaPredicted RBP11.61□□□□□ -0.55
TCOF1-203ENST00000394269 GGT7Q9UJ14 662 aa11.61□□□□□ -0.55
TCOF1-203ENST00000394269 DRG1Q9Y295 367 aaKnown RBP11.61□□□□□ -0.55
TCOF1-203ENST00000394269 MYBPHLA2RUH7 354 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 MYO1CO00159 1063 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 APOL1O14791 398 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 APRTP07741 180 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 AMPD1P23109 780 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 SULT1E1P49888 294 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 MSS51Q4VC12 460 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 BOLA3Q53S33 107 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 CCHCR1Q8TD31 782 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 KHSRPQ92945 711 aaKnown RBP eCLIP11.6□□□□□ -0.55
TCOF1-203ENST00000394269 NKD2Q969F2 451 aaPredicted RBP11.6□□□□□ -0.55
TCOF1-203ENST00000394269 RNF157Q96PX1 679 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 SLC4A5Q9BY07 1137 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 KRT82Q9NSB4 513 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 GTF2IRD1Q9UHL9 959 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 DERAQ9Y315 318 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 MFHAS1Q9Y4C4 1052 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 CITO14578 2027 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 ARL5CA6NH57 179 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 A6NNZ2 444 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 SLC10A3P09131 477 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 PCK1P35558 622 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 SNX16P57768 344 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 YWHAGP61981 247 aaKnown RBP eCLIP11.6□□□□□ -0.55
TCOF1-203ENST00000394269 GBE1Q04446 702 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms