RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 APBA1Q02410 837 aa8.46□□□□□ -1.05
LIMS1-203ENST00000393310 RPL6Q02878 288 aaKnown RBP8.46□□□□□ -1.05
LIMS1-203ENST00000393310 TTC38Q5R3I4 469 aa8.46□□□□□ -1.05
LIMS1-203ENST00000393310 CCDC62Q6P9F0 684 aa8.46□□□□□ -1.05
LIMS1-203ENST00000393310 PRR23CQ6ZRP0 262 aa8.46□□□□□ -1.05
LIMS1-203ENST00000393310 CCHCR1Q8TD31 782 aa8.46□□□□□ -1.05
LIMS1-203ENST00000393310 TMEM143Q96AN5 459 aa8.46□□□□□ -1.05
LIMS1-203ENST00000393310 ATP6V1HQ9UI12 483 aa8.46□□□□□ -1.05
LIMS1-203ENST00000393310 C2orf81A6NN90 581 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 CALUO43852 315 aaPredicted RBP8.46□□□□□ -1.06
LIMS1-203ENST00000393310 NUP62P37198 522 aaPredicted RBP8.46□□□□□ -1.06
LIMS1-203ENST00000393310 THOP1P52888 689 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 MRPS21P82921 87 aaKnown RBP8.46□□□□□ -1.06
LIMS1-203ENST00000393310 LAMTOR4Q0VGL1 99 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 SGCGQ13326 291 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 OASLQ15646 514 aaKnown RBP8.46□□□□□ -1.06
LIMS1-203ENST00000393310 PFKFB3Q16875 520 aaPredicted RBP8.46□□□□□ -1.06
LIMS1-203ENST00000393310 ARHGAP44Q17R89 818 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 C6orf163Q5TEZ5 329 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 TSHZ3Q63HK5 1081 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 CACNA2D3Q8IZS8 1091 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 SP7Q8TDD2 431 aaPredicted RBP8.46□□□□□ -1.06
LIMS1-203ENST00000393310 TMC2Q8TDI7 906 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 PNKPQ96T60 521 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 SCUBE2Q9NQ36 999 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 PRKAB1Q9Y478 270 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 PCDHGA3Q9Y5H0 932 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 C2orf71A6NGG8 1288 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 E9PAM4 449 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 GOLGA8SH3BPF8 625 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 LCA5LO95447 670 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 DCNP07585 359 aaKnown RBP8.46□□□□□ -1.06
LIMS1-203ENST00000393310 GUCY1A2P33402 732 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 CDH8P55286 799 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 ACCSLQ4AC99 568 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 SERPINA13PQ6UXR4 307 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 HVCN1Q96D96 273 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 PPP1R16AQ96I34 528 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 PI4K2AQ9BTU6 479 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 CLSTN2Q9H4D0 955 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 MRPL44Q9H9J2 332 aaKnown RBP8.46□□□□□ -1.06
LIMS1-203ENST00000393310 OLA1Q9NTK5 396 aaKnown RBP8.46□□□□□ -1.06
LIMS1-203ENST00000393310 SLC25A13Q9UJS0 675 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 BACE2Q9Y5Z0 518 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 DLEC1Q9Y238 1755 aa8.46□□□□□ -1.06
LIMS1-203ENST00000393310 GTPBP10A4D1E9 387 aaKnown RBP8.45□□□□□ -1.06
LIMS1-203ENST00000393310 EXTL3O43909 919 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 CCNE1P24864 410 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 BCAT1P54687 386 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 CBX3Q13185 183 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 GRAMD1BQ3KR37 738 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 FNDC3BQ53EP0 1204 aaKnown RBP8.45□□□□□ -1.06
LIMS1-203ENST00000393310 TRIM61Q5EBN2 209 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 SEC62Q99442 399 aaKnown RBP8.45□□□□□ -1.06
LIMS1-203ENST00000393310 TLR8Q9NR97 1041 aaKnown RBP8.45□□□□□ -1.06
LIMS1-203ENST00000393310 KLK14Q9P0G3 267 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 EXOC3O60645 756 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 MLYCDO95822 493 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 CTSEP14091 401 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 RXRAP19793 462 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 MPLP40238 635 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 SLC11A1P49279 550 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 NEK4P51957 841 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 NSUN2Q08J23 767 aaKnown RBP eCLIP8.45□□□□□ -1.06
LIMS1-203ENST00000393310 LBRQ14739 615 aaKnown RBP8.45□□□□□ -1.06
LIMS1-203ENST00000393310 ANO7Q6IWH7 933 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 XKR5Q6UX68 686 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 ZNF574Q6ZN55 896 aaPredicted RBP8.45□□□□□ -1.06
LIMS1-203ENST00000393310 CATSPER3Q86XQ3 398 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 MDM1Q8TC05 714 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 HMGB4Q8WW32 186 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 CCT6BQ92526 530 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 CCDC127Q96BQ5 260 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 TBC1D7Q9P0N9 293 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 TJP2Q9UDY2 1190 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 TMEM5Q9Y2B1 443 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 ARFGEF2Q9Y6D5 1785 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 HAS3O00219 553 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 PRLP01236 227 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 LONP1P36776 959 aaKnown RBP8.45□□□□□ -1.06
LIMS1-203ENST00000393310 CCT8P50990 548 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 MARSP56192 900 aaKnown RBP8.45□□□□□ -1.06
LIMS1-203ENST00000393310 PEX3P56589 373 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 SP2Q02086 613 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 CCNG2Q16589 344 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 C11orf91Q3C1V1 193 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 SPATA1Q5VX52 437 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 FOXR1Q6PIV2 292 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 ADGRA1Q86SQ6 560 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 CNDP2Q96KP4 475 aaKnown RBP8.45□□□□□ -1.06
LIMS1-203ENST00000393310 PRO3102Q9H379 93 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 COL24A1Q17RW2 1714 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 CCDC163A0A0D9SF12 145 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 CFAP69A5D8W1 941 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 C9IYK1 514 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 ACKR2O00590 384 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 THAP12O43422 761 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 RNF40O75150 1001 aa8.45□□□□□ -1.06
LIMS1-203ENST00000393310 RNASEH2AO75792 299 aaKnown RBP8.45□□□□□ -1.06
LIMS1-203ENST00000393310 ATP5HO75947 161 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms