RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 EEF1DP3Q658K8 133 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 GPAT2Q6NUI2 795 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 TRIM72Q6ZMU5 477 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 TDRPQ86YL5 185 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 TREML1Q86YW5 311 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 RELL1Q8IUW5 271 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 OXNAD1Q96HP4 312 aaPredicted RBP18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 SGIP1Q9BQI5 828 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 ARHGEF4Q9NR80 690 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 INO80B-WBP1J3KQ70 363 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 GRIA2P42262 883 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 RAP1GAPP47736 663 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 ZNF132P52740 706 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 GPX6P59796 221 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 C1orf146Q5VVC0 180 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 MFSD7Q6UXD7 560 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 ZPBP2Q6X784 338 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 CCDC110Q8TBZ0 833 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 ZNF398Q8TD17 642 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 FAM111AQ96PZ2 611 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 INO80BQ9C086 356 aaPredicted RBP18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 MINDY3Q9H8M7 445 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 PDGFCQ9NRA1 345 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 POLIQ9UNA4 740 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 CENPFP49454 3210 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 E5RJQ4 531 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 CNMDO75829 334 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 KITP10721 976 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 CLCN3P51790 818 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 SLC18A1P54219 525 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 PLCB3Q01970 1234 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 C1QBPQ07021 282 aaKnown RBP18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 GJC2Q5T442 439 aaPredicted RBP18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 SPATA24Q86W54 205 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 WDR49Q8IV35 697 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 SCUBE1Q8IWY4 988 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 UBR7Q8N806 425 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 TUBB6Q9BUF5 446 aa18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 DDX43Q9NXZ2 648 aaKnown RBP18.42■□□□□ 0.54
SQSTM1-202ENST00000389805 TMEM191CA6NGB0 347 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 PSTPIP1O43586 416 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 IQCF3P0C7M6 154 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 TMEM191BP0C7N4 346 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 CDH8P55286 799 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 NFX1Q12986 1120 aaKnown RBP18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 TRPC3Q13507 836 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 DUOXA2Q1HG44 320 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 TMEM132AQ24JP5 1023 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 OLFML2BQ68BL8 750 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 KATNAL2Q8IYT4 538 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 ST13P4Q8IZP2 240 aaPredicted RBP18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 PYDC1Q8WXC3 89 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 MPP4Q96JB8 637 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 VCPIP1Q96JH7 1222 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 PPP2R3BQ9Y5P8 575 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 OGTO15294 1046 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 PGM3O95394 542 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 KRT19P08727 400 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 DLDP09622 509 aaKnown RBP18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 FAM200BP0CF97 657 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 GEMIN4P57678 1058 aaKnown RBP18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 IGBP1P78318 339 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 IER5Q5VY09 327 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 LPCAT4Q643R3 524 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 DCUN1D2Q6PH85 259 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 RASSF3Q86WH2 238 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 SPATA33Q96N06 139 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 PPARGC1AQ9UBK2 798 aaKnown RBP18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 MARCOQ9UEW3 520 aaPredicted RBP18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 CPSF3Q9UKF6 684 aaKnown RBP18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 KAT6AQ92794 2004 aa18.41■□□□□ 0.54
SQSTM1-202ENST00000389805 TXNDC9O14530 226 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 PFDN1O60925 122 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 CIB2O75838 187 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 HOXC6P09630 235 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 TGFB3P10600 412 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 CEP128Q6ZU80 1094 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 NAT14Q8WUY8 206 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 NCSTNQ92542 709 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 PAFAH2Q99487 392 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 PHACTR1Q9C0D0 580 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 ZNF395Q9H8N7 513 aaPredicted RBP18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 SAE1Q9UBE0 346 aaPredicted RBP18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 MTO1Q9Y2Z2 717 aaKnown RBP18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 SCINQ9Y6U3 715 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 MEI4A8MW99 385 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 A8MXQ7 604 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 EFNA5P52803 228 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 ARHGAP24Q8N264 748 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 EXD1Q8NHP7 514 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 KCNN1Q92952 543 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 NIF3L1Q9GZT8 377 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 TMEM165Q9HC07 324 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 RBPJLQ9UBG7 517 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 SLC7A8Q9UHI5 535 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 CHMP2BQ9UQN3 213 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 COMMD3-BMI1R4GMX3 469 aa18.4■□□□□ 0.54
SQSTM1-202ENST00000389805 AP2B1P63010 937 aa18.39■□□□□ 0.54
SQSTM1-202ENST00000389805 LMNB2Q03252 620 aa18.39■□□□□ 0.54
SQSTM1-202ENST00000389805 CELF3Q5SZQ8 465 aaKnown RBP18.39■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms