RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CYP1A2P05177 515 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 HAPLN1P10915 354 aaPredicted RBP10.72□□□□□ -0.69
VPS53-202ENST00000389040 VDRP11473 427 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 CD58P19256 250 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 MTHFRP42898 656 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 RAD23BP54727 409 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 EPHB3P54753 998 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 SLC8A3P57103 927 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 DUSP4Q13115 394 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 VEPH1Q14D04 833 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 ATAT1Q5SQI0 421 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 DCAF12L1Q5VU92 463 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 SND1Q7KZF4 910 aaKnown RBP eCLIP10.72□□□□□ -0.69
VPS53-202ENST00000389040 GPR149Q86SP6 731 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 SLC7A14Q8TBB6 771 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 FAM71BQ8TC56 605 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 CAVIN3Q969G5 261 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 PCED1BQ96HM7 432 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 SPATA17Q96L03 361 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 S1PR5Q9H228 398 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 EPB41L5Q9HCM4 733 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 PNPLA8Q9NP80 782 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 CRTAC1Q9NQ79 661 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 COMMD8Q9NX08 183 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 CD207Q9UJ71 328 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 ZMYM5Q9UJ78 669 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 INSL5Q9Y5Q6 135 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 ALG6Q9Y672 507 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 CCDC195A0A1B0GUA6 201 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 ESYT3A0FGR9 886 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 ZSCAN5CA6NGD5 496 aaPredicted RBP10.71□□□□□ -0.69
VPS53-202ENST00000389040 MIF4GDA9UHW6 222 aaKnown RBP10.71□□□□□ -0.69
VPS53-202ENST00000389040 ATMINO43313 823 aaPredicted RBP10.71□□□□□ -0.69
VPS53-202ENST00000389040 MED7O43513 233 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 FGGP02679 453 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 ACAT1P24752 427 aaKnown RBP10.71□□□□□ -0.69
VPS53-202ENST00000389040 RAP1GAPP47736 663 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 ZNF132P52740 706 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 NUBP1P53384 320 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 NNTQ13423 1086 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 SMAD4Q13485 552 aaKnown RBP10.71□□□□□ -0.69
VPS53-202ENST00000389040 CLEC16AQ2KHT3 1053 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 ACAD10Q6JQN1 1059 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 LLGL2Q6P1M3 1020 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 SYCE2Q6PIF2 218 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 TMEM270Q6UE05 265 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 ACOT1Q86TX2 421 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 ZNF677Q86XU0 584 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 SLC4A11Q8NBS3 891 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 ATAD1Q8NBU5 361 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 ZBTB9Q96C00 473 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 ZNF653Q96CK0 615 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 CYFIP2Q96F07 1278 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 SMARCD1Q96GM5 515 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 C8orf48Q96LL4 319 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 ZNF512Q96ME7 567 aaPredicted RBP10.71□□□□□ -0.69
VPS53-202ENST00000389040 HEXIM2Q96MH2 286 aaKnown RBP10.71□□□□□ -0.69
VPS53-202ENST00000389040 TMEM209Q96SK2 561 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 NUP85Q9BW27 656 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 CSNK1G1Q9HCP0 422 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 PCDHB4Q9Y5E5 795 aa10.71□□□□□ -0.69
VPS53-202ENST00000389040 SCN1AP35498 2009 aa10.71□□□□□ -0.7
VPS53-202ENST00000389040 GOLGA6BA6NDN3 693 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 SOBPA7XYQ1 873 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 LINC01565O15544 149 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 TBX10O75333 385 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 OR4Q2P0C623 313 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 CSH1P0DML2 217 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 CSH2P0DML3 217 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 PTPN2P17706 415 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 CARSP49589 748 aaKnown RBP10.7□□□□□ -0.7
VPS53-202ENST00000389040 CLUL1Q15846 466 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 MGAT5BQ3V5L5 792 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 SGO2Q562F6 1265 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 MDH1BQ5I0G3 518 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 UBL4BQ8N7F7 174 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 ZNF564Q8TBZ8 553 aaPredicted RBP10.7□□□□□ -0.7
VPS53-202ENST00000389040 UBE2Q2Q8WVN8 375 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 CASKIN2Q8WXE0 1202 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 IFT81Q8WYA0 676 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 ALG3Q92685 438 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 PSMG2Q969U7 264 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 MYLPFQ96A32 169 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 NAP1L3Q99457 506 aaPredicted RBP10.7□□□□□ -0.7
VPS53-202ENST00000389040 ZSWIM1Q9BR11 485 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 DDX47Q9H0S4 455 aaKnown RBP10.7□□□□□ -0.7
VPS53-202ENST00000389040 SLITRK6Q9H5Y7 841 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 TMLHEQ9NVH6 421 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 ABI2Q9NYB9 513 aaPredicted RBP10.7□□□□□ -0.7
VPS53-202ENST00000389040 VPS18Q9P253 973 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 THEGQ9P2T0 379 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 UVRAGQ9P2Y5 699 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 CHORDC1Q9UHD1 332 aaPredicted RBP10.7□□□□□ -0.7
VPS53-202ENST00000389040 NFU1Q9UMS0 254 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 NME7Q9Y5B8 376 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 TMEM110-MUSTN1A8MSY1 372 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 ZNF197O14709 1029 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 SART1O43290 800 aaKnown RBP10.7□□□□□ -0.7
VPS53-202ENST00000389040 ATP2C2O75185 946 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 SEC24AO95486 1093 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms