RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 HLFQ16534 295 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 TAPT1Q6NXT6 567 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 SLC30A10Q6XR72 485 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 Q6ZTK2 550 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 TICAM1Q8IUC6 712 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 MAB21L3Q8N8X9 362 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 NLGN4YQ8NFZ3 816 aaPredicted RBP-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 LILRB1Q8NHL6 650 aaPredicted RBP-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 HCAR2Q8TDS4 363 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 ADAMTS14Q8WXS8 1223 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 PTPRN2Q92932 1015 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 KLHL29Q96CT2 875 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 LGALS12Q96DT0 336 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 TRMT61AQ96FX7 289 aaKnown RBP-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 PPP1R13BQ96KQ4 1090 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 FIZ1Q96SL8 496 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 SDHCQ99643 169 aaPredicted RBP-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 CABLES2Q9BTV7 478 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 CELF4Q9BZC1 486 aaKnown RBP-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 EPN3Q9H201 632 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 BCO1Q9HAY6 547 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 ZNF334Q9HCZ1 680 aaPredicted RBP-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 GINM1Q9NU53 330 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 MBD2Q9UBB5 411 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 EVLQ9UI08 416 aaPredicted RBP-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 UTS2RQ9UKP6 389 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 COL7A1Q02388 2944 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 HIVEP3Q5T1R4 2406 aa-0.16□□□□□ -2.44
RNU6-540P-201ENST00000384622 FBN2P35556 2912 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 RYR2Q92736 4967 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 SAA2-SAA4A0A096LPE2 208 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 TRBV5-3A0A0A0MS03 114 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 HMX3A6NHT5 357 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 BECN2A8MW95 431 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 F8W810 466 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 ELL2O00472 640 aaPredicted RBP-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 TEX33O43247 280 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 AKAP10O43572 662 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 DIAPH1O60610 1272 aaKnown RBP-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 CRTAMO95727 393 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 APPP05067 770 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 DPEP1P16444 411 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 DGKAP23743 735 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 SHC1P29353 583 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 PER3P56645 1201 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 RAE1P78406 368 aaKnown RBP-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 PPARAQ07869 468 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 TEFQ10587 303 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 GPS2Q13227 327 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 VPS53Q5VIR6 699 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 NAA40Q86UY6 237 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 C7orf57Q8NEG2 295 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 POC1BQ8TC44 478 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 NEK9Q8TD19 979 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 RTF1Q92541 710 aaKnown RBP-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 SMOQ99835 787 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 ELOVL1Q9BW60 279 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 OSBPL2Q9H1P3 480 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 PLAC1Q9HBJ0 212 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 FZD10Q9ULW2 581 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 USTQ9Y2C2 406 aa-0.17□□□□□ -2.44
RNU6-540P-201ENST00000384622 A0A0G2JK05 382 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 FBLL1A6NHQ2 334 aaKnown RBP-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 SRRM4A7MD48 611 aaKnown RBP-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 B2RBV5 119 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 H7C423 109 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 INPPL1O15357 1258 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 PRPF4O43172 522 aaKnown RBP eCLIP-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 RGS14O43566 566 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 ZNF354AO60765 605 aaPredicted RBP-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 DDAH1O94760 285 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 HAUS5O94927 633 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 KRT6AP02538 564 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 KRT6BP04259 564 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 P0C879 139 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 MYCLP12524 364 aaPredicted RBP-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 PHKG2P15735 406 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 MGMTP16455 207 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 FPR1P21462 350 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 ITGAEP38570 1179 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 KRT6CP48668 564 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 POU6F2P78424 691 aaPredicted RBP-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 PSG6Q00889 435 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 LARS2Q15031 903 aaKnown RBP-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 ZNF174Q15697 407 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 FAM110CQ1W6H9 321 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 SLC10A6Q3KNW5 377 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 KRTAP13-4Q3LI77 160 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 ACCSLQ4AC99 568 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 CC2D1BQ5T0F9 858 aaKnown RBP-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 UTP14CQ5TAP6 766 aaKnown RBP-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 EEPD1Q7L9B9 569 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 OTOP1Q7RTM1 612 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 PNMA8AQ86V59 439 aaPredicted RBP-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 TCP11L2Q8N4U5 519 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 TMEM174Q8WUU8 243 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 CPLX3Q8WVH0 158 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 INPP5DQ92835 1189 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 R3HDM4Q96D70 268 aa-0.18□□□□□ -2.44
RNU6-540P-201ENST00000384622 URB1-AS1Q96HZ7 61 aa-0.18□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms