RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 HEATR1Q9H583 2144 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 RBM47A0AV96 593 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 HMX3A6NHT5 357 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 BTN3A3O00478 584 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 DHRS4L1P0CG22 281 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF16P17020 682 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 CCNA2P20248 432 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 PTX3P26022 381 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SLC1A2P43004 574 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ACADSBP45954 432 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 CACNA2D1P54289 1103 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 OLR1P78380 273 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 RBM39Q14498 530 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ITIH4Q14624 930 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 KIAA1324Q6UXG2 1013 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 CXXC5Q7LFL8 322 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 PEX5LQ8IYB4 626 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 TOR1AIP2Q8NFQ8 470 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 DTX3LQ8TDB6 740 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 PPP1R13LQ8WUF5 828 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 CPT1BQ92523 772 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 DHTKD1Q96HY7 919 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 MRPL47Q9HD33 250 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 NPHS2Q9NP85 383 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 DAPK2Q9UIK4 370 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SF3B1O75533 1304 aaKnown RBP eCLIP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SSNA1O43805 119 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ASS1P00966 412 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 RFC5P40937 340 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 RPL11P62913 178 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SP140Q13342 867 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 DCTN2Q13561 401 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 GNA13Q14344 377 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 MPPED2Q15777 294 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 KRT24Q2M2I5 525 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 GALNTL6Q49A17 601 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SLC45A4Q5BKX6 768 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF658Q5TYW1 1059 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 EID3Q8N140 333 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SLC25A41Q8N5S1 370 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 NAXEQ8NCW5 288 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 OTUD7AQ8TE49 926 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SSH3Q8TE77 659 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 DNAJA4Q8WW22 397 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 EEF2KMTQ96G04 330 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SEC16BQ96JE7 1060 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 NSMCE2Q96MF7 247 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 PLEKHF1Q96S99 279 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 MSTO1Q9BUK6 570 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 CST11Q9H112 138 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 M0R2N6 131 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 TRIM24O15164 1050 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 MFAP3LO75121 409 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SIN3BO75182 1162 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 CYP2D6P10635 497 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 HSPA2P54652 639 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 MRPS25P82663 173 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 FSCN1Q16658 493 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ABCB5Q2M3G0 1257 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ATP13A5Q4VNC0 1218 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 CENPUQ71F23 418 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ADCY4Q8NFM4 1077 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 OR2L8Q8NGY9 312 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 NIFKQ9BYG3 293 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SLC6A15Q9H2J7 730 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 BCAS3Q9H6U6 928 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 CD209Q9NNX6 404 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SNX7Q9UNH6 387 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 GMEB1Q9Y692 573 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SBNO1A3KN83 1393 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 DISP3Q9P2K9 1392 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 C9orf84Q5VXU9 1444 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 A0A087WWV3 80 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 NCF1BA6NI72 391 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 NCF1CA8MVU1 366 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 CSTBP04080 98 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 NCF1P14598 390 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ITPKBP27987 946 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ADSLP30566 484 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 CHRNB4P30926 498 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 DSG1Q02413 1049 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 DMTNQ08495 405 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 KCNIP4Q6PIL6 250 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 PRPF39Q86UA1 669 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 BPIFA2Q96DR5 249 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 TUBB6Q9BUF5 446 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 PRRG3Q9BZD7 231 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 UBE2TQ9NPD8 197 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 PCDH12Q9NPG4 1184 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 C20orf96Q9NUD7 363 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 CMTM6Q9NX76 183 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 EHD2Q9NZN4 543 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 DCTN4Q9UJW0 460 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 MRPS7Q9Y2R9 242 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 PCDHA11Q9Y5I1 949 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 MPPED1O15442 326 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 TAF5LO75529 589 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 RSL1D1O76021 490 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 GLP2RO95838 553 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms