RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 CETN2P41208 172 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 GLUD2P49448 558 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 SLC5A3P53794 718 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 DSG1Q02413 1049 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 ODF2Q5BJF6 829 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 SLC8B1Q6J4K2 584 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 RNF19BQ6ZMZ0 732 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 HFE2Q6ZVN8 426 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 DDX53Q86TM3 631 aaKnown RBP19.54■□□□□ 0.72
CLN3-204ENST00000357857 GPR161Q8N6U8 529 aaKnown RBP19.54■□□□□ 0.72
CLN3-204ENST00000357857 LBHD1Q9BQE6 289 aaPredicted RBP19.54■□□□□ 0.72
CLN3-204ENST00000357857 PCDHB12Q9Y5F1 795 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 GREB1Q4ZG55 1949 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 C2CD2LO14523 706 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 TNFRSF10BO14763 440 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 PRPSAP2O60256 369 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 LTFP02788 710 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 RHOXF2BP0C7M4 288 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 SMTNL2Q2TAL5 461 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 RAB6CQ53S08 254 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 DCAF6Q58WW2 860 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 BHLHA9Q7RTU4 235 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 ADAT2Q7Z6V5 191 aaKnown RBP19.53■□□□□ 0.72
CLN3-204ENST00000357857 HERC6Q8IVU3 1022 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 PHOSPHO2Q8TCD6 241 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 CENPIQ92674 756 aaPredicted RBP19.53■□□□□ 0.72
CLN3-204ENST00000357857 RNF25Q96BH1 459 aaPredicted RBP19.53■□□□□ 0.72
CLN3-204ENST00000357857 SLITRK1Q96PX8 696 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 PEBP4Q96S96 227 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 RHOXF2Q9BQY4 288 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 RAB6CQ9H0N0 254 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 STAP1Q9ULZ2 295 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 PLXNA3P51805 1871 aa19.53■□□□□ 0.72
CLN3-204ENST00000357857 ZNF638Q14966 1978 aaKnown RBP19.53■□□□□ 0.72
CLN3-204ENST00000357857 GOLGA6L10A0A0M3HER8 536 aa19.52■□□□□ 0.72
CLN3-204ENST00000357857 PI4K2BG5E9Z4 385 aa19.52■□□□□ 0.72
CLN3-204ENST00000357857 ADAM12O43184 909 aa19.52■□□□□ 0.72
CLN3-204ENST00000357857 VNN2O95498 520 aa19.52■□□□□ 0.72
CLN3-204ENST00000357857 TFE3P19532 575 aaPredicted RBP19.52■□□□□ 0.72
CLN3-204ENST00000357857 SULT1E1P49888 294 aa19.52■□□□□ 0.72
CLN3-204ENST00000357857 HDAC4P56524 1084 aa19.52■□□□□ 0.72
CLN3-204ENST00000357857 ROR1Q01973 937 aa19.52■□□□□ 0.72
CLN3-204ENST00000357857 DDR2Q16832 855 aa19.52■□□□□ 0.72
CLN3-204ENST00000357857 SLC25A52Q3SY17 297 aa19.52■□□□□ 0.72
CLN3-204ENST00000357857 CCDC70Q6NSX1 233 aa19.52■□□□□ 0.72
CLN3-204ENST00000357857 STRADAQ7RTN6 431 aa19.52■□□□□ 0.72
CLN3-204ENST00000357857 TTC9BQ8N6N2 239 aa19.52■□□□□ 0.72
CLN3-204ENST00000357857 SCAMP5Q8TAC9 235 aa19.52■□□□□ 0.72
CLN3-204ENST00000357857 ACSF2Q96CM8 615 aaPredicted RBP19.52■□□□□ 0.72
CLN3-204ENST00000357857 TBCBQ99426 244 aa19.52■□□□□ 0.72
CLN3-204ENST00000357857 EPC1Q9H2F5 836 aa19.52■□□□□ 0.72
CLN3-204ENST00000357857 MTIF3Q9H2K0 278 aaKnown RBP19.52■□□□□ 0.72
CLN3-204ENST00000357857 LRRD1A4D1F6 860 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 CAPN9O14815 690 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 FSCN2O14926 492 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 URODP06132 367 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 ATP2A2P16615 1042 aaKnown RBP19.51■□□□□ 0.71
CLN3-204ENST00000357857 RPL17P18621 184 aaKnown RBP19.51■□□□□ 0.71
CLN3-204ENST00000357857 OR1D2P34982 312 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 GPR15P49685 360 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 COPS2P61201 443 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 IFRD2Q12894 506 aaPredicted RBP19.51■□□□□ 0.71
CLN3-204ENST00000357857 LLGL1Q15334 1064 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 KCNT1Q5JUK3 1230 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 SCYL2Q6P3W7 929 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 NUP93Q8N1F7 819 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 RAPGEF5Q92565 580 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 DPF3Q92784 378 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 KRT12Q99456 494 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 NPY6RQ99463 290 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 RAD9AQ99638 391 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 OSBPL8Q9BZF1 889 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 MTUS1Q9ULD2 1270 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 NAALADL1Q9UQQ1 740 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 NR2E1Q9Y466 385 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 COL4A4P53420 1690 aaPredicted RBP19.51■□□□□ 0.71
CLN3-204ENST00000357857 WDR27A2RRH5 827 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 FYNP06241 537 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 LINC00271P0C7V0 271 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 RARAP10276 462 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 HAPLN1P10915 354 aaPredicted RBP19.51■□□□□ 0.71
CLN3-204ENST00000357857 RALAP11233 206 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 KRT17Q04695 432 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 MGAT5BQ3V5L5 792 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 SDHAF4Q5VUM1 108 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 SYPL2Q5VXT5 272 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 MFSD7Q6UXD7 560 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 SPOCD1Q6ZMY3 1216 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 CYP4V2Q6ZWL3 525 aaPredicted RBP19.51■□□□□ 0.71
CLN3-204ENST00000357857 KLHL7Q8IXQ5 586 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 VPS52Q8N1B4 723 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 MAIP1Q8WWC4 291 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 HSPH1Q92598 858 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 CLP1Q92989 425 aaKnown RBP19.51■□□□□ 0.71
CLN3-204ENST00000357857 NT5C3BQ969T7 300 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 SEPT5Q99719 369 aaPredicted RBP19.51■□□□□ 0.71
CLN3-204ENST00000357857 CLSTN3Q9BQT9 956 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 TRIM62Q9BVG3 475 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 ADAM33Q9BZ11 813 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 CRISPLD1Q9H336 500 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms