RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 SLC35F5Q8WV83 523 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 SNRNP25Q9BV90 132 aaKnown RBP22.69■■□□□ 1.22
SHMT1-202ENST00000352886 B3GNT5Q9BYG0 378 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 FAM49AQ9H0Q0 323 aaPredicted RBP22.69■■□□□ 1.22
SHMT1-202ENST00000352886 PLEKHA5Q9HAU0 1116 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 PCDH18Q9HCL0 1135 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 HESX1Q9UBX0 185 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 PAPSS1O43252 624 aaPredicted RBP22.69■■□□□ 1.22
SHMT1-202ENST00000352886 AVILO75366 819 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 ATP6V1G2O95670 118 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 NQO1P15559 274 aaKnown RBP22.69■■□□□ 1.22
SHMT1-202ENST00000352886 BCAR1P56945 870 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 ZNF467Q7Z7K2 595 aaPredicted RBP22.69■■□□□ 1.22
SHMT1-202ENST00000352886 SESTD1Q86VW0 696 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 TEKT4Q8WW24 435 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 C18orf25Q96B23 403 aaPredicted RBP22.69■■□□□ 1.22
SHMT1-202ENST00000352886 KLHL29Q96CT2 875 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 SNX27Q96L92 541 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 CYTH2Q99418 400 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 KLF6Q99612 283 aaPredicted RBP22.69■■□□□ 1.22
SHMT1-202ENST00000352886 EIF2AQ9BY44 585 aaKnown RBP22.69■■□□□ 1.22
SHMT1-202ENST00000352886 TEX264Q9Y6I9 313 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 TCRBV9S1A1TA0A576 114 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 IGF2BP3O00425 579 aaKnown RBP eCLIP22.68■■□□□ 1.22
SHMT1-202ENST00000352886 CHADO15335 359 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 STRNO43815 780 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 FGFR1P11362 822 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 TGM2P21980 687 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 ADRA1DP25100 572 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 DUSP28Q4G0W2 176 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 SLC27A1Q6PCB7 646 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 DPP9Q86TI2 863 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 OR6J1Q8NGC5 347 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 OR6B3Q8NGW1 331 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 PCDH19Q8TAB3 1148 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 LPIN3Q9BQK8 851 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 RNF19AQ9NV58 838 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 PAK5Q9P286 719 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 DERAQ9Y315 318 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 GABBR2O75899 941 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 RBL1P28749 1068 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 GCLCP48506 637 aaPredicted RBP22.68■■□□□ 1.22
SHMT1-202ENST00000352886 CCDC15Q0P6D6 951 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 SEPT7Q16181 437 aaKnown RBP22.68■■□□□ 1.22
SHMT1-202ENST00000352886 DGKDQ16760 1214 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 DPY19L2Q6NUT2 758 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 CATSPER4Q7RTX7 472 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 KIF2BQ8N4N8 673 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 TCP10LQ8TDR4 215 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 BAIAP2L1Q9UHR4 511 aa22.68■■□□□ 1.22
SHMT1-202ENST00000352886 SETSIPP0DME0 302 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 YWHAGP61981 247 aaKnown RBP eCLIP22.67■■□□□ 1.22
SHMT1-202ENST00000352886 PPP6R3Q5H9R7 873 aaPredicted RBP22.67■■□□□ 1.22
SHMT1-202ENST00000352886 PPP1R13LQ8WUF5 828 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 ZNF75CPQ92670 426 aaPredicted RBP22.67■■□□□ 1.22
SHMT1-202ENST00000352886 TBCBQ99426 244 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 ADAMTS10Q9H324 1103 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 DPEP3Q9H4B8 488 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 BTBD19C9JJ37 291 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 HCRTO43612 131 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 ZBED1O96006 694 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 DESP17661 470 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 HDAC4P56524 1084 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 ZBTB6Q15916 424 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 KBTBD12Q3ZCT8 623 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 SLC9A4Q6AI14 798 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 BANPQ8N9N5 519 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 BEST2Q8NFU1 509 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 LRRN4Q8WUT4 740 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 C12orf65Q9H3J6 166 aaKnown RBP22.67■■□□□ 1.22
SHMT1-202ENST00000352886 CDHR5Q9HBB8 845 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 IKBKGQ9Y6K9 419 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 USH1CQ9Y6N9 552 aa22.67■■□□□ 1.22
SHMT1-202ENST00000352886 HOXD8P13378 290 aaPredicted RBP22.66■■□□□ 1.22
SHMT1-202ENST00000352886 TFE3P19532 575 aaPredicted RBP22.66■■□□□ 1.22
SHMT1-202ENST00000352886 PTK7Q13308 1070 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 FAXCQ5TGI0 409 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 AGGF1Q8N302 714 aaeCLIP22.66■■□□□ 1.22
SHMT1-202ENST00000352886 C7orf31Q8N865 590 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 USP6NLQ92738 828 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 RTP4Q96DX8 246 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 L3MBTL3Q96JM7 780 aaPredicted RBP22.66■■□□□ 1.22
SHMT1-202ENST00000352886 GCOM2Q9BZD3 368 aaPredicted RBP22.66■■□□□ 1.22
SHMT1-202ENST00000352886 ZNF408Q9H9D4 720 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 NOD2Q9HC29 1040 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 SLC17A7Q9P2U7 560 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 WDR91A4D1P6 747 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 A8MXQ7 604 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 MDM4O15151 490 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 ZNF200P98182 395 aaPredicted RBP22.66■■□□□ 1.22
SHMT1-202ENST00000352886 SOWAHAQ2M3V2 549 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 APBB1IPQ7Z5R6 666 aaPredicted RBP22.66■■□□□ 1.22
SHMT1-202ENST00000352886 LRRC52Q8N7C0 313 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 CLEC4CQ8WTT0 213 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 ALKBH8Q96BT7 664 aaKnown RBP22.66■■□□□ 1.22
SHMT1-202ENST00000352886 MAML3Q96JK9 1138 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 OSMRQ99650 979 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 ZNF670Q9BS34 389 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 MYLK2Q9H1R3 596 aa22.66■■□□□ 1.22
SHMT1-202ENST00000352886 TRIM33Q9UPN9 1127 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms