RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TNFSF9P41273 254 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 MYL6P60660 151 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 DENND1BQ6P3S1 775 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 CGRRF1Q99675 332 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 SHCBP1LQ9BZQ2 653 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 CISHQ9NSE2 258 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 DDX43Q9NXZ2 648 aaKnown RBP23.28■■□□□ 1.32
TRIM28-202ENST00000341753 KCNA2P16389 499 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 CCND2P30279 289 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 SLC25A3Q00325 362 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 GSTA3Q16772 222 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 PTPN20Q4JDL3 420 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 DARS2Q6PI48 645 aaKnown RBP23.27■■□□□ 1.32
TRIM28-202ENST00000341753 POU5F2Q8N7G0 328 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 ZNF280CQ8ND82 737 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 MCPH1Q8NEM0 835 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 USP6NLQ92738 828 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 ZNF214Q9UL59 606 aaPredicted RBP23.27■■□□□ 1.32
TRIM28-202ENST00000341753 TEX264Q9Y6I9 313 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 ARHGAP42A6NI28 874 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 F8W8V4 182 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 KRT3P12035 628 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 TRMT5Q32P41 509 aaKnown RBP23.27■■□□□ 1.32
TRIM28-202ENST00000341753 HIPK4Q8NE63 616 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 NR1H4Q96RI1 486 aaPredicted RBP23.27■■□□□ 1.32
TRIM28-202ENST00000341753 IMPG2Q9BZV3 1241 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 MTMR12Q9C0I1 747 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 OCEL1Q9H607 264 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 PDLIM7Q9NR12 457 aa23.27■■□□□ 1.32
TRIM28-202ENST00000341753 TTLL13PA6NNM8 815 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 LPCAT4Q643R3 524 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 NUDCD3Q8IVD9 361 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 REPS2Q8NFH8 660 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 FAF2Q96CS3 445 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 CYTH4Q9UIA0 394 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 PLLPQ9Y342 182 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 CNTNAP2Q9UHC6 1331 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 A0A0B4J269 797 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 MCF2LO15068 1137 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 C6orf222P0C671 652 aaPredicted RBP23.26■■□□□ 1.31
TRIM28-202ENST00000341753 PDE1BQ01064 536 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 SP2Q02086 613 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 TTC39BQ5VTQ0 682 aaPredicted RBP23.26■■□□□ 1.31
TRIM28-202ENST00000341753 ZBTB33Q86T24 672 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 SLC26A11Q86WA9 606 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 ATP6V0A1Q93050 837 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 MMP19Q99542 508 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 VPS33BQ9H267 617 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 PICK1Q9NRD5 415 aa23.26■■□□□ 1.31
TRIM28-202ENST00000341753 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.25■■□□□ 1.31
TRIM28-202ENST00000341753 K7ERI5 159 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 CD19P15391 556 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 TTC13Q8NBP0 860 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 CCDC106Q9BWC9 280 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 SPATA16Q9BXB7 569 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 FAM192AQ9GZU8 254 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 WWP1Q9H0M0 922 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 SMYD2Q9NRG4 433 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 POLIQ9UNA4 740 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 TTLL3Q9Y4R7 772 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 RGPD3A6NKT7 1758 aaPredicted RBP23.25■■□□□ 1.31
TRIM28-202ENST00000341753 RGPD4Q7Z3J3 1758 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 BAG6P46379 1132 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 RAB6CQ53S08 254 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 ISLR2Q6UXK2 745 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 EFCAB3Q8N7B9 438 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 TRPM4Q8TD43 1214 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 UBE2OQ9C0C9 1292 aaKnown RBP23.25■■□□□ 1.31
TRIM28-202ENST00000341753 RAB6CQ9H0N0 254 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 RAB6BQ9NRW1 208 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 COL11A1P12107 1806 aaPredicted RBP23.25■■□□□ 1.31
TRIM28-202ENST00000341753 KIAA1217Q5T5P2 1943 aa23.25■■□□□ 1.31
TRIM28-202ENST00000341753 EPHB1P54762 984 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 EMC2Q15006 297 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 RALGPS1Q5JS13 557 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 C1orf228Q6PIY5 440 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 TMEM130Q8N3G9 435 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 NIPA2Q8N8Q9 360 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 B4GALNT2Q8NHY0 566 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 DEPTORQ8TB45 409 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 CCDC124Q96CT7 223 aaKnown RBP23.24■■□□□ 1.31
TRIM28-202ENST00000341753 OPHN1O60890 802 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 PDE5AO76074 875 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 CRABP2P29373 138 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 PSMC1P62191 440 aaKnown RBP23.24■■□□□ 1.31
TRIM28-202ENST00000341753 SLC5A9Q2M3M2 681 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 FAM91A1Q658Y4 838 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 RASSF3Q86WH2 238 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 C7orf26Q96N11 449 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 APOL6Q9BWW8 343 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 JPH1Q9HDC5 661 aaPredicted RBP23.24■■□□□ 1.31
TRIM28-202ENST00000341753 KLF11O14901 512 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 BUD23O43709 281 aaKnown RBP23.24■■□□□ 1.31
TRIM28-202ENST00000341753 LYPLA1O75608 230 aaPredicted RBP23.24■■□□□ 1.31
TRIM28-202ENST00000341753 KRT7P08729 469 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 SPATA31D3P0C874 917 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 ACTR2P61160 394 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 HADHQ16836 314 aaKnown RBP23.24■■□□□ 1.31
TRIM28-202ENST00000341753 LIN52Q52LA3 116 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 TEX44Q53QW1 395 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms