RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 TBCBQ99426 244 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 PKMYT1Q99640 499 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 SNRNP25Q9BV90 132 aaKnown RBP13.99□□□□□ -0.17
HMGB1-202ENST00000339872 ULBP1Q9BZM6 244 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 UBXN6Q9BZV1 441 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 CRISPLD2Q9H0B8 497 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 GBP1P32455 592 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 CYP2C18P33260 490 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 HSPA9P38646 679 aaKnown RBP13.98□□□□□ -0.17
HMGB1-202ENST00000339872 SULT1E1P49888 294 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 YWHAZP63104 245 aaKnown RBP13.98□□□□□ -0.17
HMGB1-202ENST00000339872 MMRN1Q13201 1228 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 DPYSL3Q14195 570 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 BOLA3Q53S33 107 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 DCAF6Q58WW2 860 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 ZC3H12AQ5D1E8 599 aaKnown RBP13.98□□□□□ -0.17
HMGB1-202ENST00000339872 ZDHHC24Q6UX98 284 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 BBS12Q6ZW61 710 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 ZNF365Q70YC5 407 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 DEFB128Q7Z7B8 93 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 LRRTM3Q86VH5 581 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 FBXO25Q8TCJ0 367 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 DIS3LQ8TF46 1054 aaKnown RBP13.98□□□□□ -0.17
HMGB1-202ENST00000339872 TEKT4Q8WW24 435 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 CASD1Q96PB1 797 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 SAE1Q9UBE0 346 aaPredicted RBP13.98□□□□□ -0.17
HMGB1-202ENST00000339872 ZNF148Q9UQR1 794 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 MICAL3Q7RTP6 2002 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 PATJQ8NI35 1801 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 NRP1O14786 923 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 TADA2AO75478 443 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 FBXO21O94952 628 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 VPS41P49754 854 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 MAPRE1Q15691 268 aaKnown RBP13.98□□□□□ -0.17
HMGB1-202ENST00000339872 HSP90B2PQ58FF3 399 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 RAB41Q5JT25 222 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 CENPIQ92674 756 aaPredicted RBP13.98□□□□□ -0.17
HMGB1-202ENST00000339872 LRRC45Q96CN5 670 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 NRDE2Q9H7Z3 1164 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 CSNK1G1Q9HCP0 422 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 VWA8A3KMH1 1905 aa13.98□□□□□ -0.17
HMGB1-202ENST00000339872 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.97□□□□□ -0.17
HMGB1-202ENST00000339872 HHLA1C9JL84 531 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 MDM4O15151 490 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 TRAPPC3O43617 180 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 ENDOD1O94919 500 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 GGCXP38435 758 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 ARSEP51690 589 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 VCPP55072 806 aaKnown RBP13.97□□□□□ -0.17
HMGB1-202ENST00000339872 DAOAP59103 153 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 OTUD4Q01804 1114 aaKnown RBP13.97□□□□□ -0.17
HMGB1-202ENST00000339872 LMNB2Q03252 620 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 CALCOCO2Q13137 446 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 SLC25A52Q3SY17 297 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 DRICH1Q6PGQ1 229 aaPredicted RBP13.97□□□□□ -0.17
HMGB1-202ENST00000339872 HFE2Q6ZVN8 426 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 STRADAQ7RTN6 431 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 TMC3Q7Z5M5 1100 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 CTU1Q7Z7A3 348 aaKnown RBP13.97□□□□□ -0.17
HMGB1-202ENST00000339872 MAP7D3Q8IWC1 876 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 ACTL9Q8TC94 416 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 ZNF333Q96JL9 665 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 MAK16Q9BXY0 300 aaKnown RBP13.97□□□□□ -0.17
HMGB1-202ENST00000339872 POPDC2Q9HBU9 364 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 DMAP1Q9NPF5 467 aaPredicted RBP13.97□□□□□ -0.17
HMGB1-202ENST00000339872 CNGB3Q9NQW8 809 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 HCSTQ9UBK5 93 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 ATP11BQ9Y2G3 1177 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 FNDC1Q4ZHG4 1894 aaPredicted RBP13.97□□□□□ -0.17
HMGB1-202ENST00000339872 YJEFN3A6XGL0 299 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 E7ENQ6 273 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 CXCL10P02778 98 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 OR4Q2P0C623 313 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 USP17L7P0C7H9 530 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 ATF2P15336 505 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 NOS2P35228 1153 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 PDK2Q15119 407 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 CA9Q16790 459 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 CFAP58Q5T655 872 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 NPAS4Q8IUM7 802 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 SPATA2LQ8IUW3 424 aaPredicted RBP13.97□□□□□ -0.17
HMGB1-202ENST00000339872 TTC13Q8NBP0 860 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 SNF8Q96H20 258 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 TOX2Q96NM4 488 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 RUFY1Q96T51 708 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 PCDH18Q9HCL0 1135 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 CALCOCO1Q9P1Z2 691 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 ADAM28Q9UKQ2 775 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 STAP1Q9ULZ2 295 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 NEU2Q9Y3R4 380 aa13.97□□□□□ -0.17
HMGB1-202ENST00000339872 SYNJ2BP-COX16A0A087WUM0 186 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 AGPSO00116 658 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 CAPN9O14815 690 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 HOXA2O43364 376 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 PARNO95453 639 aaKnown RBP13.96□□□□□ -0.17
HMGB1-202ENST00000339872 KRT14P02533 472 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 PITX1P78337 314 aaPredicted RBP13.96□□□□□ -0.17
HMGB1-202ENST00000339872 DHX9Q08211 1270 aaKnown RBP13.96□□□□□ -0.17
HMGB1-202ENST00000339872 OASLQ15646 514 aaKnown RBP13.96□□□□□ -0.17
HMGB1-202ENST00000339872 PPP6R3Q5H9R7 873 aaPredicted RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms