RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 ESYT3A0FGR9 886 aa16.17■□□□□ 0.18
LIMS1-202ENST00000338045 TRIM43BA6NCK2 446 aa16.17■□□□□ 0.18
LIMS1-202ENST00000338045 HSPA1AP0DMV8 641 aaKnown RBP16.17■□□□□ 0.18
LIMS1-202ENST00000338045 HSPA1BP0DMV9 641 aaKnown RBP16.17■□□□□ 0.18
LIMS1-202ENST00000338045 KRT10P13645 584 aa16.17■□□□□ 0.18
LIMS1-202ENST00000338045 TFE3P19532 575 aaPredicted RBP16.17■□□□□ 0.18
LIMS1-202ENST00000338045 ELAVL2Q12926 359 aaKnown RBP16.17■□□□□ 0.18
LIMS1-202ENST00000338045 BOLA3Q53S33 107 aa16.17■□□□□ 0.18
LIMS1-202ENST00000338045 BHLHA9Q7RTU4 235 aa16.17■□□□□ 0.18
LIMS1-202ENST00000338045 JAMLQ86YT9 394 aa16.17■□□□□ 0.18
LIMS1-202ENST00000338045 GSPT2Q8IYD1 628 aaKnown RBP16.17■□□□□ 0.18
LIMS1-202ENST00000338045 DEFB106AQ8N104 65 aa16.17■□□□□ 0.18
LIMS1-202ENST00000338045 C1orf54Q8WWF1 131 aa16.17■□□□□ 0.18
LIMS1-202ENST00000338045 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.17■□□□□ 0.18
LIMS1-202ENST00000338045 NDRG1Q92597 394 aaKnown RBP16.17■□□□□ 0.18
LIMS1-202ENST00000338045 TRIM43Q96BQ3 446 aaPredicted RBP16.17■□□□□ 0.18
LIMS1-202ENST00000338045 FUT8Q9BYC5 575 aa16.17■□□□□ 0.18
LIMS1-202ENST00000338045 RAB17Q9H0T7 212 aa16.17■□□□□ 0.18
LIMS1-202ENST00000338045 R3HDM2Q9Y2K5 976 aaKnown RBP16.17■□□□□ 0.18
LIMS1-202ENST00000338045 UTP11Q9Y3A2 253 aaKnown RBP16.17■□□□□ 0.18
LIMS1-202ENST00000338045 COL4A6Q14031 1691 aa16.17■□□□□ 0.18
LIMS1-202ENST00000338045 MKI67P46013 3256 aaKnown RBP16.16■□□□□ 0.18
LIMS1-202ENST00000338045 NOS2P35228 1153 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 RABGGTBP53611 331 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 DRG2P55039 364 aaKnown RBP16.16■□□□□ 0.18
LIMS1-202ENST00000338045 BCAR1P56945 870 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 CUL1Q13616 776 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 TRADDQ15628 312 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 SLC25A52Q3SY17 297 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 FAM171A1Q5VUB5 890 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 DUPD1Q68J44 220 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 PM20D1Q6GTS8 502 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 FUT10Q6P4F1 479 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 SPATA2LQ8IUW3 424 aaPredicted RBP16.16■□□□□ 0.18
LIMS1-202ENST00000338045 DCP1BQ8IZD4 617 aaKnown RBP16.16■□□□□ 0.18
LIMS1-202ENST00000338045 FAM149B1Q96BN6 582 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 FUBP3Q96I24 572 aaKnown RBP eCLIP16.16■□□□□ 0.18
LIMS1-202ENST00000338045 ERP44Q9BS26 406 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 POPDC2Q9HBU9 364 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 USP3Q9Y6I4 520 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 MAP2K7O14733 419 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 MDM4O15151 490 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 EFEMP2O95967 443 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 EPHB4P54760 987 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 NFE2Q16621 373 aaPredicted RBP16.16■□□□□ 0.18
LIMS1-202ENST00000338045 KAZNQ674X7 775 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 EMBQ6PCB8 327 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 DRICH1Q6PGQ1 229 aaPredicted RBP16.16■□□□□ 0.18
LIMS1-202ENST00000338045 VSIG1Q86XK7 387 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 CCDC105Q8IYK2 499 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 KCTD6Q8NC69 237 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 ATG4AQ8WYN0 398 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 IRGQQ8WZA9 623 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 TOP1MTQ969P6 601 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 NPY6RQ99463 290 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 TRIM51Q9BSJ1 452 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 TMEM106CQ9BVX2 250 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 RASAL2Q9UJF2 1139 aa16.16■□□□□ 0.18
LIMS1-202ENST00000338045 COL4A4P53420 1690 aaPredicted RBP16.15■□□□□ 0.18
LIMS1-202ENST00000338045 OR6C75A6NL08 312 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 TBC1D4O60343 1298 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 SASH3O75995 380 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 ZBED1O96006 694 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 FYNP06241 537 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 CD48P09326 243 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 OR4Q2P0C623 313 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 ECHS1P30084 290 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 KCNJ1P48048 391 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 SLC39A12Q504Y0 691 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 OTUD1Q5VV17 481 aaPredicted RBP16.15■□□□□ 0.18
LIMS1-202ENST00000338045 ZNF280DQ6N043 979 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 HFE2Q6ZVN8 426 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 BBS12Q6ZW61 710 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 TMEM173Q86WV6 379 aaPredicted RBP16.15■□□□□ 0.18
LIMS1-202ENST00000338045 FAM71BQ8TC56 605 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 HSPH1Q92598 858 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 CWH43Q9H720 699 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.15■□□□□ 0.18
LIMS1-202ENST00000338045 PATJQ8NI35 1801 aa16.15■□□□□ 0.18
LIMS1-202ENST00000338045 YJEFN3A6XGL0 299 aa16.14■□□□□ 0.17
LIMS1-202ENST00000338045 E7ENQ6 273 aa16.14■□□□□ 0.17
LIMS1-202ENST00000338045 UPP2O95045 317 aa16.14■□□□□ 0.17
LIMS1-202ENST00000338045 USP17L7P0C7H9 530 aa16.14■□□□□ 0.17
LIMS1-202ENST00000338045 CSF2RAP15509 400 aa16.14■□□□□ 0.17
LIMS1-202ENST00000338045 PDK2Q15119 407 aa16.14■□□□□ 0.17
LIMS1-202ENST00000338045 CTXN3Q4LDR2 81 aa16.14■□□□□ 0.17
LIMS1-202ENST00000338045 DCAF6Q58WW2 860 aa16.14■□□□□ 0.17
LIMS1-202ENST00000338045 MFSD5Q6N075 450 aa16.14■□□□□ 0.17
LIMS1-202ENST00000338045 SCYL2Q6P3W7 929 aa16.14■□□□□ 0.17
LIMS1-202ENST00000338045 HDXQ7Z353 690 aa16.14■□□□□ 0.17
LIMS1-202ENST00000338045 BCL7CQ8WUZ0 217 aaPredicted RBP16.14■□□□□ 0.17
LIMS1-202ENST00000338045 IFT81Q8WYA0 676 aa16.14■□□□□ 0.17
LIMS1-202ENST00000338045 CAVIN3Q969G5 261 aa16.14■□□□□ 0.17
LIMS1-202ENST00000338045 ZNF689Q96CS4 500 aaPredicted RBP16.14■□□□□ 0.17
LIMS1-202ENST00000338045 SNRNP25Q9BV90 132 aaKnown RBP16.14■□□□□ 0.17
LIMS1-202ENST00000338045 RC3H2Q9HBD1 1191 aaKnown RBP16.14■□□□□ 0.17
LIMS1-202ENST00000338045 FAM114A2Q9NRY5 505 aa16.14■□□□□ 0.17
LIMS1-202ENST00000338045 CALCOCO1Q9P1Z2 691 aa16.14■□□□□ 0.17
LIMS1-202ENST00000338045 FEZ2Q9UHY8 353 aaPredicted RBP16.14■□□□□ 0.17
LIMS1-202ENST00000338045 NFU1Q9UMS0 254 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms