RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 YWHAGP61981 247 aaKnown RBP eCLIP16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 PDCLQ13371 301 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 ZNF268Q14587 947 aaPredicted RBP16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 PM20D1Q6GTS8 502 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 ARHGAP18Q8N392 663 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 C1orf131Q8NDD1 294 aaKnown RBP16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 SLC20A1Q8WUM9 679 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 EDAQ92838 391 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 LRRC3BQ96PB8 259 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 TRMT61BQ9BVS5 477 aaKnown RBP16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 MIS12Q9H081 205 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 LHX5Q9H2C1 402 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 EPHX3Q9H6B9 360 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 CNGB3Q9NQW8 809 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 SMPD4Q9NXE4 827 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 NOCTQ9UK39 431 aaKnown RBP16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 ARHGAP26Q9UNA1 814 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 CPQQ9Y646 472 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 HELZP42694 1942 aaKnown RBP16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 OLFM2O95897 454 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 MMEP08473 750 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 RARGP13631 454 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 GDI1P31150 447 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 PBX1P40424 430 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 ACADSBP45954 432 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 DAOAP59103 153 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 GPC5P78333 572 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 SLC7A9P82251 487 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 PLCB2Q00722 1185 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 BHLHA9Q7RTU4 235 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 BPIFB1Q8TDL5 484 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 SH3RF2Q8TEC5 729 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 STK32AQ8WU08 396 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 DDX1Q92499 740 aaKnown RBP16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 BAP1Q92560 729 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 NOX5Q96PH1 765 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 SLC4A5Q9BY07 1137 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 BRD9Q9H8M2 597 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 TRIOO75962 3097 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 CUL9Q8IWT3 2517 aa16.69■□□□□ 0.26
CCDC28A-201ENST00000332797 FAM170AA1A519 330 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 LRRC53A6NM62 1247 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 E5RJQ4 531 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 FBXO21O94952 628 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 TBX18O95935 607 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 RALAP11233 206 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 RPL34P49207 117 aaKnown RBP16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 FCHO2Q0JRZ9 810 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 USP4Q13107 963 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 C10orf120Q5SQS8 335 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 ZNF677Q86XU0 584 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 WDTC1Q8N5D0 677 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 RIN3Q8TB24 985 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 CLEC4CQ8WTT0 213 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 PPP1R13BQ96KQ4 1090 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 TTYH3Q9C0H2 523 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 RBSNQ9H1K0 784 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 CYLDQ9NQC7 956 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 SLC2A4RGQ9NR83 387 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 CLIC5Q9NZA1 410 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 NUDT5Q9UKK9 219 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 FBXL21Q9UKT6 434 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 MYO6Q9UM54 1294 aa16.68■□□□□ 0.26
CCDC28A-201ENST00000332797 YJEFN3A6XGL0 299 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 E7ENQ6 273 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 LEFTY2O00292 366 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 ZNF263O14978 683 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 MDM4O15151 490 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 FERP16591 822 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 ATP5C1P36542 298 aaKnown RBP16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 CDR2Q01850 454 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 SIGLEC14Q08ET2 396 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 ZNF77Q15935 545 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 BTBD8Q5XKL5 378 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 RSRC2Q7L4I2 434 aaKnown RBP16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 TADA2BQ86TJ2 420 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 SCUBE3Q8IX30 993 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 SCML4Q8N228 414 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 TMEM35BQ8NCS4 154 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 IRGQQ8WZA9 623 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 ZFYVE19Q96K21 471 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 CPXM1Q96SM3 734 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 CDK5RAP1Q96SZ6 601 aaKnown RBP16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 NUP58Q9BVL2 599 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 THG1LQ9NWX6 298 aaKnown RBP16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 TJP2Q9UDY2 1190 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 CHADO15335 359 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 CCDC172P0C7W6 258 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 CHRNB2P17787 502 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 ZXDBP98169 803 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 MTF1Q14872 753 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 ARHGAP29Q52LW3 1261 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 FIGNQ5HY92 759 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 CC2D1AQ6P1N0 951 aaPredicted RBP16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 TRIM67Q6ZTA4 783 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 HFE2Q6ZVN8 426 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 TMEM110Q86TL2 294 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 GAS2L3Q86XJ1 694 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 FMNL3Q8IVF7 1028 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms