RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 HPDLQ96IR7 371 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 KCNH7Q9NS40 1196 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 ASB14A6NK59 587 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 AHCYL1O43865 530 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 AKAP3O75969 853 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 AKT1P31749 480 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 RGS2P41220 211 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 ITGB3BPQ13352 177 aaPredicted RBP17.89■□□□□ 0.45
SYNPO-201ENST00000307662 CDC42EP5Q6NZY7 148 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 TARS2Q9BW92 718 aaKnown RBP17.89■□□□□ 0.45
SYNPO-201ENST00000307662 RAD23AP54725 363 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 ARHGEF6Q15052 776 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 B3GNT6Q6ZMB0 384 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 SLC47A2Q86VL8 602 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 CROCCP3Q8IVE0 287 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 ZNF483Q8TF39 744 aaPredicted RBP17.89■□□□□ 0.45
SYNPO-201ENST00000307662 TADA1Q96BN2 335 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 RNF112Q9ULX5 631 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 UBDO15205 165 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 AP1G2O75843 785 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 TXNP10599 105 aaKnown RBP17.89■□□□□ 0.45
SYNPO-201ENST00000307662 RARBP10826 455 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 AGKQ53H12 422 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 IL31Q6EBC2 164 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 MOXD1Q6UVY6 613 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 OTOAQ7RTW8 1153 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 LPAR1Q92633 364 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 KAZALD1Q96I82 304 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 SMARCAD1Q9H4L7 1026 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 RMND5AQ9H871 391 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 ITM2BQ9Y287 266 aa17.89■□□□□ 0.45
SYNPO-201ENST00000307662 KDM6AO15550 1401 aaPredicted RBP17.89■□□□□ 0.45
SYNPO-201ENST00000307662 ALADP13716 330 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 C4BPBP20851 252 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 CDC25CP30307 473 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 SOAT1P35610 550 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 DNAAF5Q86Y56 855 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 TTC30BQ8N4P2 665 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 LINC00116Q8NCU8 138 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 COQ7Q99807 217 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 CHST12Q9NRB3 414 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 ATAD3AQ9NVI7 634 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 SV2CQ496J9 727 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 KCTD14Q9BQ13 255 aaPredicted RBP17.88■□□□□ 0.45
SYNPO-201ENST00000307662 MAFGO15525 162 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 PHGDHO43175 533 aaKnown RBP17.88■□□□□ 0.45
SYNPO-201ENST00000307662 GSTT1P30711 240 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 GALNTL6Q49A17 601 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 ATP6AP1LQ52LC2 224 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 ZRANB3Q5FWF4 1079 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 NT5DC3Q86UY8 548 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 RDM1Q8NG50 284 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 SLC5A5Q92911 643 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 CYLDQ9NQC7 956 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 AAR2Q9Y312 384 aaKnown RBP17.88■□□□□ 0.45
SYNPO-201ENST00000307662 ZC3H4Q9UPT8 1303 aaKnown RBP17.88■□□□□ 0.45
SYNPO-201ENST00000307662 SNX3O60493 162 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 PLIN5Q00G26 463 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 PKN2Q16513 984 aaKnown RBP17.88■□□□□ 0.45
SYNPO-201ENST00000307662 N4BP2L1Q5TBK1 243 aaPredicted RBP17.88■□□□□ 0.45
SYNPO-201ENST00000307662 UGT3A1Q6NUS8 523 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 TRIM63Q969Q1 353 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 AGXT2Q9BYV1 514 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 ACOT9Q9Y305 439 aa17.88■□□□□ 0.45
SYNPO-201ENST00000307662 ZNF862O60290 1169 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 PMPCBO75439 489 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 MAP3K6O95382 1288 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 RBP1P09455 135 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 CYP51A1Q16850 503 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 MRNIPQ6NTE8 343 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 SMIM5Q71RC9 77 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 TBC1D19Q8N5T2 526 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.87■□□□□ 0.45
SYNPO-201ENST00000307662 CYP4F12Q9HCS2 524 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 TRMT6Q9UJA5 497 aaKnown RBP17.87■□□□□ 0.45
SYNPO-201ENST00000307662 KRT87PA6NCN2 255 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 CNOT3O75175 753 aaKnown RBP17.87■□□□□ 0.45
SYNPO-201ENST00000307662 NTRK3Q16288 839 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 DGKDQ16760 1214 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 RSBN1Q5VWQ0 802 aaPredicted RBP17.87■□□□□ 0.45
SYNPO-201ENST00000307662 TSHZ1Q6ZSZ6 1077 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 KIAA0895Q8NCT3 520 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 VPS33AQ96AX1 596 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 LRRC4BQ9NT99 713 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 PRMT7Q9NVM4 692 aaPredicted RBP17.87■□□□□ 0.45
SYNPO-201ENST00000307662 GPRC5DQ9NZD1 345 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 ARMCX1Q9P291 453 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 STARD13Q9Y3M8 1113 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 LRRIQ1Q96JM4 1722 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 GPR75-ASB3A0A0A6YYF3 556 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 CLOCKO15516 846 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 MPOP05164 745 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 TKFCQ3LXA3 575 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 KCTD21Q4G0X4 260 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 DHFR2Q86XF0 187 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 OSCP1Q8WVF1 389 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 MAP3K20Q9NYL2 800 aaKnown RBP17.87■□□□□ 0.45
SYNPO-201ENST00000307662 WWOXQ9NZC7 414 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 SPATA31A1Q5TZJ5 1347 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 SNTNA6NMZ2 147 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms