RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 C5orf42Q9H799 3197 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 TJP3O95049 919 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 PECAM1P16284 738 aaPredicted RBP17.24■□□□□ 0.35
USP4-201ENST00000265560 CETN2P41208 172 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 GPR15P49685 360 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 PGFP49763 221 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 C1orf228Q6PIY5 440 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 TAS1R1Q7RTX1 841 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 OR2W6PQ8NHA6 318 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 ZNF333Q96JL9 665 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 DHX35Q9H5Z1 703 aaKnown RBP17.24■□□□□ 0.35
USP4-201ENST00000265560 GGCXP38435 758 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 SLC11A1P49279 550 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 YWHAZP63104 245 aaKnown RBP17.23■□□□□ 0.35
USP4-201ENST00000265560 SYCP2LQ5T4T6 812 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 CCDC25Q86WR0 208 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 ACTL9Q8TC94 416 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 ACBD6Q9BR61 282 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 SULT1E1P49888 294 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 OTUD4Q01804 1114 aaKnown RBP17.23■□□□□ 0.35
USP4-201ENST00000265560 MTM1Q13496 603 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 DHX34Q14147 1143 aaKnown RBP17.23■□□□□ 0.35
USP4-201ENST00000265560 KRT81Q14533 505 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 ZC3H18Q86VM9 953 aaKnown RBP17.23■□□□□ 0.35
USP4-201ENST00000265560 KRT222Q8N1A0 295 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 ATAD1Q8NBU5 361 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 UHMK1Q8TAS1 419 aaKnown RBP17.23■□□□□ 0.35
USP4-201ENST00000265560 RAB17Q9H0T7 212 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 DDX56Q9NY93 547 aaKnown RBP17.23■□□□□ 0.35
USP4-201ENST00000265560 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.23■□□□□ 0.35
USP4-201ENST00000265560 VWA8A3KMH1 1905 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 CAPN9O14815 690 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 AMHP03971 560 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 ACRP10323 421 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 GRIK1P39086 918 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 DDR2Q16832 855 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 SKIDA1Q1XH10 827 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 LRRC26Q2I0M4 334 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 THEM5Q8N1Q8 247 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 SMARCD1Q96GM5 515 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 GRHL1Q9NZI5 618 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 ATP8A1Q9Y2Q0 1164 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 HEY1Q9Y5J3 304 aa17.23■□□□□ 0.35
USP4-201ENST00000265560 M0QYT0 321 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 RRP9O43818 475 aaKnown RBP17.22■□□□□ 0.35
USP4-201ENST00000265560 FYNP06241 537 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 NCAM1P13591 858 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 BYSLQ13895 437 aaKnown RBP17.22■□□□□ 0.35
USP4-201ENST00000265560 POLNQ7Z5Q5 900 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 DNAI2Q9GZS0 605 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 MFHAS1Q9Y4C4 1052 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 MYO18AQ92614 2054 aaKnown RBP17.22■□□□□ 0.35
USP4-201ENST00000265560 C2CD2LO14523 706 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 ALDH2P05091 517 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 OAS2P29728 719 aaKnown RBP17.22■□□□□ 0.35
USP4-201ENST00000265560 ADCY8P40145 1251 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 ACADSBP45954 432 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 DHX9Q08211 1270 aaKnown RBP17.22■□□□□ 0.35
USP4-201ENST00000265560 VARS2Q5ST30 1063 aaKnown RBP17.22■□□□□ 0.35
USP4-201ENST00000265560 FAM171BQ6P995 826 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 EMBQ6PCB8 327 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 ZDHHC24Q6UX98 284 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 ANKRD33Q7Z3H0 272 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 CMASQ8NFW8 434 aaPredicted RBP17.22■□□□□ 0.35
USP4-201ENST00000265560 SLC7A14Q8TBB6 771 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 BCL7CQ8WUZ0 217 aaPredicted RBP17.22■□□□□ 0.35
USP4-201ENST00000265560 VWCEQ96DN2 955 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 RASAL2Q9UJF2 1139 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 SLC27A5Q9Y2P5 690 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 NR2E3Q9Y5X4 410 aa17.22■□□□□ 0.35
USP4-201ENST00000265560 LIASO43766 372 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 CYP11A1P05108 521 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 GDF10P55107 478 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 TSPY1Q01534 308 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 DPYSL3Q14195 570 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 CLUL1Q15846 466 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 UROC1Q96N76 676 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 ADAM28Q9UKQ2 775 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 HHLA1C9JL84 531 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 CSPG5O95196 566 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 RPL17P18621 184 aaKnown RBP17.21■□□□□ 0.35
USP4-201ENST00000265560 IL4RP24394 825 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 PCK1P35558 622 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 SNX16P57768 344 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 CUL1Q13616 776 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 CCNG2Q16589 344 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 EFHC1Q5JVL4 640 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 RSPO2Q6UXX9 243 aaPredicted RBP17.21■□□□□ 0.35
USP4-201ENST00000265560 SPATA2LQ8IUW3 424 aaPredicted RBP17.21■□□□□ 0.35
USP4-201ENST00000265560 C12orf50Q8NA57 414 aaPredicted RBP17.21■□□□□ 0.35
USP4-201ENST00000265560 ATL2Q8NHH9 583 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 UBLCP1Q8WVY7 318 aaPredicted RBP17.21■□□□□ 0.35
USP4-201ENST00000265560 MAK16Q9BXY0 300 aaKnown RBP17.21■□□□□ 0.35
USP4-201ENST00000265560 LRRC4CQ9HCJ2 640 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 FAM53CQ9NYF3 392 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 FAN1Q9Y2M0 1017 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 NUP205Q92621 2012 aa17.21■□□□□ 0.35
USP4-201ENST00000265560 AGPSO00116 658 aa17.21■□□□□ 0.34
USP4-201ENST00000265560 KRT14P02533 472 aa17.21■□□□□ 0.34
USP4-201ENST00000265560 CSF2RAP15509 400 aa17.21■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms