RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 XYLT1Q86Y38 959 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 MFN1Q8IWA4 741 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 TTC13Q8NBP0 860 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 SMC1BQ8NDV3 1235 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 CMASQ8NFW8 434 aaPredicted RBP12.9□□□□□ -0.34
NUP88-201ENST00000225696 CFAP61Q8NHU2 1237 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 USP6NLQ92738 828 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 E2F7Q96AV8 911 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 FAF2Q96CS3 445 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 PIWIL1Q96J94 861 aaKnown RBP12.9□□□□□ -0.34
NUP88-201ENST00000225696 TWNKQ96RR1 684 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 XYLT2Q9H1B5 865 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 USP29Q9HBJ7 922 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 KCNK4Q9NYG8 393 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 A8MXQ7 604 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 MCF2LO15068 1137 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 LYPLA1O75608 230 aaPredicted RBP12.9□□□□□ -0.34
NUP88-201ENST00000225696 IL1BP01584 269 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 SUPT20HL2P0C7V6 817 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 NAMPTP43490 491 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 SLC25A3Q00325 362 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 PDE1BQ01064 536 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 CDC16Q13042 620 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 SUPT20HL1Q3ZLR7 823 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 MROH9Q5TGP6 573 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 TTC39BQ5VTQ0 682 aaPredicted RBP12.9□□□□□ -0.34
NUP88-201ENST00000225696 SLFN12LQ6IEE8 588 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 STYK1Q6J9G0 422 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 MTHFD1LQ6UB35 978 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 BRSK2Q8IWQ3 736 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 THNSL1Q8IYQ7 743 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 UNC5BQ8IZJ1 945 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 CCDC33Q8N5R6 958 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 RNF217Q8TC41 542 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 ZNF778Q96MU6 729 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 ECSITQ9BQ95 431 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 TCHPQ9BT92 498 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 IQCGQ9H095 443 aaKnown RBP12.9□□□□□ -0.34
NUP88-201ENST00000225696 EBF3Q9H4W6 596 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 POPDC2Q9HBU9 364 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 ZNF277Q9NRM2 450 aaPredicted RBP12.9□□□□□ -0.34
NUP88-201ENST00000225696 DDX43Q9NXZ2 648 aaKnown RBP12.9□□□□□ -0.34
NUP88-201ENST00000225696 MAP3K20Q9NYL2 800 aaKnown RBP12.9□□□□□ -0.34
NUP88-201ENST00000225696 SIRPGQ9P1W8 387 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 SLC17A6Q9P2U8 582 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 USP18Q9UMW8 372 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 PCDHGC3Q9UN70 934 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 PPME1Q9Y570 386 aa12.9□□□□□ -0.34
NUP88-201ENST00000225696 A0A088AWK7 358 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 BUD23O43709 281 aaKnown RBP12.89□□□□□ -0.35
NUP88-201ENST00000225696 TRUB2O95900 331 aaKnown RBP12.89□□□□□ -0.35
NUP88-201ENST00000225696 LDHAP00338 332 aaKnown RBP12.89□□□□□ -0.35
NUP88-201ENST00000225696 EGFRP00533 1210 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 C6orf222P0C671 652 aaPredicted RBP12.89□□□□□ -0.35
NUP88-201ENST00000225696 CPOXP36551 454 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 ROR1Q01973 937 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 MAP3K10Q02779 954 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 TAP1Q03518 808 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 C15orf59Q2T9L4 293 aaPredicted RBP12.89□□□□□ -0.35
NUP88-201ENST00000225696 RALGPS1Q5JS13 557 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 C1orf146Q5VVC0 180 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 SNRNP48Q6IEG0 339 aaKnown RBP12.89□□□□□ -0.35
NUP88-201ENST00000225696 PPP1R2P3Q6NXS1 205 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 MPP5Q8N3R9 675 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 POU5F2Q8N7G0 328 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 CEP120Q8N960 986 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 PYDC1Q8WXC3 89 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 LPAR1Q92633 364 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 C7orf26Q96N11 449 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 SHCBP1LQ9BZQ2 653 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 ZNF518BQ9C0D4 1074 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.89□□□□□ -0.35
NUP88-201ENST00000225696 GPATCH2LQ9NWQ4 482 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 ETAA1Q9NY74 926 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 ZC3H7BQ9UGR2 993 aaKnown RBP12.89□□□□□ -0.35
NUP88-201ENST00000225696 FZD1Q9UP38 647 aa12.89□□□□□ -0.35
NUP88-201ENST00000225696 CTDP1Q9Y5B0 961 aaPredicted RBP12.89□□□□□ -0.35
NUP88-201ENST00000225696 F8W8V4 182 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 H0YCG3 227 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 I3L4J1 428 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 WNT10BO00744 389 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 ITM2AO43736 263 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 PEX10O60683 326 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 GRAP2O75791 330 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 GSRP00390 522 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 OATP04181 439 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 GMPRP36959 345 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 GRIA1P42261 906 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 SMAD1Q15797 465 aaKnown RBP12.88□□□□□ -0.35
NUP88-201ENST00000225696 HADHQ16836 314 aaKnown RBP12.88□□□□□ -0.35
NUP88-201ENST00000225696 NET1Q7Z628 596 aaPredicted RBP12.88□□□□□ -0.35
NUP88-201ENST00000225696 WDR49Q8IV35 697 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 NUDCD3Q8IVD9 361 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 EFCAB3Q8N7B9 438 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 SDCBP2Q9H190 292 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 TAGLN3Q9UI15 199 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 HBS1LQ9Y450 684 aaKnown RBP12.88□□□□□ -0.35
NUP88-201ENST00000225696 FER1L6Q2WGJ9 1857 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 KLHL33A6NCF5 533 aa12.88□□□□□ -0.35
NUP88-201ENST00000225696 H7C0C1 242 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms