RNA–Protein interactions for RNA: ENST00000639394.1

PAX6-256, Transcript of paired box 6, human

TSL 5

Gene PAX6, Length 1,988 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PAX6-256	ENST00000639394	ERBB4	Q15303	1308 aa		13.59	□□□□□ -0.23
PAX6-256	ENST00000639394	IRF6	O14896	467 aa		13.59	□□□□□ -0.23
PAX6-256	ENST00000639394	ZBTB22	O15209	634 aa		13.59	□□□□□ -0.23
PAX6-256	ENST00000639394	CWC22	Q9HCG8	908 aa	Known RBP	13.59	□□□□□ -0.23
PAX6-256	ENST00000639394	BRMS1	Q9HCU9	246 aa		13.59	□□□□□ -0.23
PAX6-256	ENST00000639394	SMC4	Q9NTJ3	1288 aa		13.59	□□□□□ -0.23
PAX6-256	ENST00000639394	KIF1C	O43896	1103 aa	Known RBP	13.58	□□□□□ -0.24
PAX6-256	ENST00000639394	CAMSAP2	Q08AD1	1489 aa		13.58	□□□□□ -0.24
PAX6-256	ENST00000639394	CDC42BPB	Q9Y5S2	1711 aa		13.58	□□□□□ -0.24
PAX6-256	ENST00000639394	ZNF644	Q9H582	1327 aa	Predicted RBP	13.58	□□□□□ -0.24
PAX6-256	ENST00000639394	MAPKBP1	O60336	1514 aa		13.57	□□□□□ -0.24
PAX6-256	ENST00000639394	PTPRK	Q15262	1439 aa		13.57	□□□□□ -0.24
PAX6-256	ENST00000639394	MSN	P26038	577 aa	Known RBP	13.57	□□□□□ -0.24
PAX6-256	ENST00000639394	BECN1	Q14457	450 aa		13.57	□□□□□ -0.24
PAX6-256	ENST00000639394	MYO5C	Q9NQX4	1742 aa		13.57	□□□□□ -0.24
PAX6-256	ENST00000639394	LOC102724159	A0A0B4J2E5	919 aa		13.56	□□□□□ -0.24
PAX6-256	ENST00000639394	PWP2	Q15269	919 aa	Known RBP	13.56	□□□□□ -0.24
PAX6-256	ENST00000639394	SASS6	Q6UVJ0	657 aa		13.56	□□□□□ -0.24
PAX6-256	ENST00000639394	ABCA9	Q8IUA7	1624 aa		13.56	□□□□□ -0.24
PAX6-256	ENST00000639394	TRIM6-TRIM34	B2RNG4	842 aa		13.56	□□□□□ -0.24
PAX6-256	ENST00000639394	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.56	□□□□□ -0.24
PAX6-256	ENST00000639394	CREBRF	Q8IUR6	639 aa		13.56	□□□□□ -0.24
PAX6-256	ENST00000639394	MNS1	Q8NEH6	495 aa		13.56	□□□□□ -0.24
PAX6-256	ENST00000639394	TRIM34	Q9BYJ4	488 aa		13.56	□□□□□ -0.24
PAX6-256	ENST00000639394	PLCH2	O75038	1416 aa		13.56	□□□□□ -0.24
PAX6-256	ENST00000639394	DNMT1	P26358	1616 aa	Known RBP	13.55	□□□□□ -0.24
PAX6-256	ENST00000639394	DAPK1	P53355	1430 aa		13.54	□□□□□ -0.24
PAX6-256	ENST00000639394	CCDC173	Q0VFZ6	552 aa		13.54	□□□□□ -0.24
PAX6-256	ENST00000639394	DDX10	Q13206	875 aa	Known RBP	13.54	□□□□□ -0.24
PAX6-256	ENST00000639394	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.54	□□□□□ -0.24
PAX6-256	ENST00000639394	ARHGAP5	Q13017	1502 aa		13.54	□□□□□ -0.24
PAX6-256	ENST00000639394	ARAP3	Q8WWN8	1544 aa		13.54	□□□□□ -0.24
PAX6-256	ENST00000639394	SAMD9L	Q8IVG5	1584 aa		13.54	□□□□□ -0.24
PAX6-256	ENST00000639394	ABCC5	O15440	1437 aa		13.53	□□□□□ -0.24
PAX6-256	ENST00000639394	GRPEL1	Q9HAV7	217 aa		13.53	□□□□□ -0.24
PAX6-256	ENST00000639394	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.53	□□□□□ -0.24
PAX6-256	ENST00000639394	DHX57	Q6P158	1386 aa	Known RBP	13.53	□□□□□ -0.24
PAX6-256	ENST00000639394	KIF16B	Q96L93	1317 aa		13.52	□□□□□ -0.24
PAX6-256	ENST00000639394	CFAP65	Q6ZU64	1925 aa	Known RBP	13.52	□□□□□ -0.25
PAX6-256	ENST00000639394	NRDC	O43847	1150 aa		13.52	□□□□□ -0.25
PAX6-256	ENST00000639394	MCM5	P33992	734 aa		13.52	□□□□□ -0.25
PAX6-256	ENST00000639394	HSP90AB4P	Q58FF6	505 aa		13.52	□□□□□ -0.25
PAX6-256	ENST00000639394	ZNF692	Q9BU19	519 aa	Predicted RBP	13.52	□□□□□ -0.25
PAX6-256	ENST00000639394	PRR29	P0C7W0	189 aa		13.51	□□□□□ -0.25
PAX6-256	ENST00000639394	TNNT3	P45378	269 aa	Predicted RBP	13.51	□□□□□ -0.25
PAX6-256	ENST00000639394	GTF2A1	P52655	376 aa	Predicted RBP	13.51	□□□□□ -0.25
PAX6-256	ENST00000639394	FEZ1	Q99689	392 aa		13.51	□□□□□ -0.25
PAX6-256	ENST00000639394	PANK2	Q9BZ23	570 aa		13.51	□□□□□ -0.25
PAX6-256	ENST00000639394	DONSON	Q9NYP3	566 aa		13.51	□□□□□ -0.25
PAX6-256	ENST00000639394	TRH	P20396	242 aa	Predicted RBP	13.51	□□□□□ -0.25
PAX6-256	ENST00000639394	PPP1R9B	Q96SB3	815 aa		13.51	□□□□□ -0.25
PAX6-256	ENST00000639394	SETD5	Q9C0A6	1442 aa		13.5	□□□□□ -0.25
PAX6-256	ENST00000639394	ARID4A	P29374	1257 aa	Predicted RBP	13.5	□□□□□ -0.25
PAX6-256	ENST00000639394	CCDC27	Q2M243	656 aa		13.5	□□□□□ -0.25
PAX6-256	ENST00000639394	SMG6	Q86US8	1419 aa	Known RBP	13.5	□□□□□ -0.25
PAX6-256	ENST00000639394	MBD5	Q9P267	1494 aa		13.5	□□□□□ -0.25
PAX6-256	ENST00000639394	ARHGEF5	Q12774	1597 aa		13.49	□□□□□ -0.25
PAX6-256	ENST00000639394	HFM1	A2PYH4	1435 aa		13.49	□□□□□ -0.25
PAX6-256	ENST00000639394	AKNA	Q7Z591	1439 aa		13.49	□□□□□ -0.25
PAX6-256	ENST00000639394	CBX1	P83916	185 aa		13.49	□□□□□ -0.25
PAX6-256	ENST00000639394	SETDB1	Q15047	1291 aa		13.49	□□□□□ -0.25
PAX6-256	ENST00000639394	EFCAB2	Q5VUJ9	269 aa		13.49	□□□□□ -0.25
PAX6-256	ENST00000639394	RNF217	Q8TC41	542 aa		13.49	□□□□□ -0.25
PAX6-256	ENST00000639394	PLEKHH2	Q8IVE3	1493 aa		13.49	□□□□□ -0.25
PAX6-256	ENST00000639394	KIAA1107	Q9UPP5	1409 aa		13.49	□□□□□ -0.25
PAX6-256	ENST00000639394	RAD50	Q92878	1312 aa		13.49	□□□□□ -0.25
PAX6-256	ENST00000639394	CHMP4C	Q96CF2	233 aa		13.49	□□□□□ -0.25
PAX6-256	ENST00000639394	FAM210A	Q96ND0	272 aa		13.49	□□□□□ -0.25
PAX6-256	ENST00000639394	MRVI1	Q9Y6F6	885 aa		13.49	□□□□□ -0.25
PAX6-256	ENST00000639394	CROCC2	H7BZ55	1655 aa		13.48	□□□□□ -0.25
PAX6-256	ENST00000639394	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.48	□□□□□ -0.25
PAX6-256	ENST00000639394	SIRT1	Q96EB6	747 aa		13.48	□□□□□ -0.25
PAX6-256	ENST00000639394	SLC26A8	Q96RN1	970 aa		13.48	□□□□□ -0.25
PAX6-256	ENST00000639394	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	13.48	□□□□□ -0.25
PAX6-256	ENST00000639394	ROCK1	Q13464	1354 aa		13.47	□□□□□ -0.25
PAX6-256	ENST00000639394	RAB3GAP2	Q9H2M9	1393 aa		13.47	□□□□□ -0.25
PAX6-256	ENST00000639394	ZNF853	P0CG23	659 aa		13.47	□□□□□ -0.25
PAX6-256	ENST00000639394	NAIP	Q13075	1403 aa		13.47	□□□□□ -0.25
PAX6-256	ENST00000639394	GLI2	P10070	1586 aa		13.47	□□□□□ -0.25
PAX6-256	ENST00000639394	KIF3C	O14782	793 aa		13.47	□□□□□ -0.25
PAX6-256	ENST00000639394	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.47	□□□□□ -0.25
PAX6-256	ENST00000639394	CHIC2	Q9UKJ5	165 aa		13.47	□□□□□ -0.25
PAX6-256	ENST00000639394	SYCP2	Q9BX26	1530 aa		13.47	□□□□□ -0.25
PAX6-256	ENST00000639394	SHANK2	Q9UPX8	1470 aa		13.47	□□□□□ -0.25
PAX6-256	ENST00000639394	ABCC1	P33527	1531 aa		13.46	□□□□□ -0.25
PAX6-256	ENST00000639394	TSHZ1	Q6ZSZ6	1077 aa		13.46	□□□□□ -0.25
PAX6-256	ENST00000639394	ITFG2	Q969R8	447 aa		13.46	□□□□□ -0.25
PAX6-256	ENST00000639394	CD109	Q6YHK3	1445 aa		13.46	□□□□□ -0.25
PAX6-256	ENST00000639394	ARHGEF12	Q9NZN5	1544 aa		13.46	□□□□□ -0.26
PAX6-256	ENST00000639394	FANCA	O15360	1455 aa		13.45	□□□□□ -0.26
PAX6-256	ENST00000639394	CCDC141	Q6ZP82	1450 aa		13.45	□□□□□ -0.26
PAX6-256	ENST00000639394	HMGN5	P82970	282 aa	Known RBP	13.45	□□□□□ -0.26
PAX6-256	ENST00000639394	TMTC2	Q8N394	836 aa		13.45	□□□□□ -0.26
PAX6-256	ENST00000639394	ADGRL2	O95490	1459 aa		13.45	□□□□□ -0.26
PAX6-256	ENST00000639394	CAPN2	P17655	700 aa		13.45	□□□□□ -0.26
PAX6-256	ENST00000639394	CCDC96	Q2M329	555 aa		13.45	□□□□□ -0.26
PAX6-256	ENST00000639394	MED4	Q9NPJ6	270 aa		13.45	□□□□□ -0.26
PAX6-256	ENST00000639394	GCC2	Q8IWJ2	1684 aa		13.44	□□□□□ -0.26
PAX6-256	ENST00000639394	DIP2B	Q9P265	1576 aa		13.44	□□□□□ -0.26
PAX6-256	ENST00000639394	MKL1	Q969V6	931 aa		13.44	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms