RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 FCF1Q9Y324 198 aaKnown RBP10.78□□□□□ -0.68
CD44-239ENST00000639002 ZNF598Q86UK7 904 aaKnown RBP10.77□□□□□ -0.69
CD44-239ENST00000639002 NUTM1Q86Y26 1132 aa10.77□□□□□ -0.69
CD44-239ENST00000639002 USB1Q9BQ65 265 aaKnown RBP10.77□□□□□ -0.69
CD44-239ENST00000639002 MMP16P51512 607 aa10.76□□□□□ -0.69
CD44-239ENST00000639002 BCANQ96GW7 911 aa10.76□□□□□ -0.69
CD44-239ENST00000639002 NRG2O14511 850 aaPredicted RBP10.75□□□□□ -0.69
CD44-239ENST00000639002 NDUFV2P19404 249 aa10.75□□□□□ -0.69
CD44-239ENST00000639002 LAPTM4AQ15012 233 aa10.75□□□□□ -0.69
CD44-239ENST00000639002 BEGAINQ9BUH8 593 aa10.75□□□□□ -0.69
CD44-239ENST00000639002 PDZRN3Q9UPQ7 1066 aa10.75□□□□□ -0.69
CD44-239ENST00000639002 MOXD2PA6NHM9 499 aa10.74□□□□□ -0.69
CD44-239ENST00000639002 PDE4DQ08499 809 aa10.74□□□□□ -0.69
CD44-239ENST00000639002 Q6ZNB5 142 aa10.74□□□□□ -0.69
CD44-239ENST00000639002 ZNF697Q5TEC3 545 aa10.73□□□□□ -0.69
CD44-239ENST00000639002 GDF9O60383 454 aa10.72□□□□□ -0.69
CD44-239ENST00000639002 DXOO77932 396 aaKnown RBP10.72□□□□□ -0.69
CD44-239ENST00000639002 FDX1P10109 184 aa10.72□□□□□ -0.69
CD44-239ENST00000639002 RPIAP49247 311 aa10.71□□□□□ -0.69
CD44-239ENST00000639002 TBC1D2Q9BYX2 928 aa10.7□□□□□ -0.7
CD44-239ENST00000639002 PKD2L1Q9P0L9 805 aa10.69□□□□□ -0.7
CD44-239ENST00000639002 PRR20EP86478 221 aa10.68□□□□□ -0.7
CD44-239ENST00000639002 PRR20CP86479 221 aa10.68□□□□□ -0.7
CD44-239ENST00000639002 PRR20DP86480 221 aa10.68□□□□□ -0.7
CD44-239ENST00000639002 PRR20BP86481 221 aa10.68□□□□□ -0.7
CD44-239ENST00000639002 PRR20AP86496 221 aa10.68□□□□□ -0.7
CD44-239ENST00000639002 RETREG3Q86VR2 466 aa10.67□□□□□ -0.7
CD44-239ENST00000639002 TNFRSF10AO00220 468 aa10.66□□□□□ -0.7
CD44-239ENST00000639002 TRAF7Q6Q0C0 670 aa10.66□□□□□ -0.7
CD44-239ENST00000639002 JUNDP17535 347 aa10.65□□□□□ -0.7
CD44-239ENST00000639002 PCDHB15Q9Y5E8 787 aa10.65□□□□□ -0.7
CD44-239ENST00000639002 C6orf229H3BNL8 230 aa10.64□□□□□ -0.71
CD44-239ENST00000639002 CD2BP2O95400 341 aaKnown RBP10.64□□□□□ -0.71
CD44-239ENST00000639002 RSBN1LQ6PCB5 846 aaPredicted RBP10.64□□□□□ -0.71
CD44-239ENST00000639002 SPTLC1O15269 473 aa10.63□□□□□ -0.71
CD44-239ENST00000639002 GJA5P36382 358 aa10.63□□□□□ -0.71
CD44-239ENST00000639002 FOXC1Q12948 553 aa10.62□□□□□ -0.71
CD44-239ENST00000639002 PTCRAQ6ISU1 281 aaPredicted RBP10.61□□□□□ -0.71
CD44-239ENST00000639002 CCDC24Q8N4L8 307 aa10.61□□□□□ -0.71
CD44-239ENST00000639002 ZBTB24O43167 697 aaPredicted RBP10.6□□□□□ -0.71
CD44-239ENST00000639002 TRIM32Q13049 653 aa10.6□□□□□ -0.71
CD44-239ENST00000639002 DIXDC1Q155Q3 683 aa10.6□□□□□ -0.71
CD44-239ENST00000639002 RIC3Q7Z5B4 369 aa10.6□□□□□ -0.71
CD44-239ENST00000639002 MTMR2Q13614 643 aa10.59□□□□□ -0.71
CD44-239ENST00000639002 MYSM1Q5VVJ2 828 aa10.59□□□□□ -0.71
CD44-239ENST00000639002 PRR7Q8TB68 274 aa10.59□□□□□ -0.71
CD44-239ENST00000639002 NUDT12Q9BQG2 462 aa10.58□□□□□ -0.72
CD44-239ENST00000639002 TOR4AQ9NXH8 423 aa10.58□□□□□ -0.72
CD44-239ENST00000639002 LIMD1Q9UGP4 676 aa10.58□□□□□ -0.72
CD44-239ENST00000639002 DGAT1O75907 488 aa10.57□□□□□ -0.72
CD44-239ENST00000639002 HRCP23327 699 aa10.57□□□□□ -0.72
CD44-239ENST00000639002 SKOR1P84550 965 aa10.57□□□□□ -0.72
CD44-239ENST00000639002 MYT1Q01538 1121 aa10.56□□□□□ -0.72
CD44-239ENST00000639002 CABLES1Q8TDN4 633 aa10.56□□□□□ -0.72
CD44-239ENST00000639002 GPBP1L1Q9HC44 474 aaPredicted RBP10.56□□□□□ -0.72
CD44-239ENST00000639002 SPDYE5A6NIY4 337 aa10.55□□□□□ -0.72
CD44-239ENST00000639002 CFAP99D6REC4 459 aa10.55□□□□□ -0.72
CD44-239ENST00000639002 DESI1Q6ICB0 168 aa10.55□□□□□ -0.72
CD44-239ENST00000639002 FAM187AA6NFU0 413 aa10.54□□□□□ -0.72
CD44-239ENST00000639002 WNT7AO00755 349 aa10.54□□□□□ -0.72
CD44-239ENST00000639002 PKDCCQ504Y2 493 aa10.54□□□□□ -0.72
CD44-239ENST00000639002 EVA1BQ9NVM1 165 aa10.54□□□□□ -0.72
CD44-239ENST00000639002 CCNYL3P0C7X3 344 aa10.53□□□□□ -0.72
CD44-239ENST00000639002 QPCTQ16769 361 aa10.53□□□□□ -0.72
CD44-239ENST00000639002 PTPRNQ16849 979 aa10.53□□□□□ -0.72
CD44-239ENST00000639002 CSPP1Q1MSJ5 1256 aa10.53□□□□□ -0.72
CD44-239ENST00000639002 PRPF38BQ5VTL8 546 aaKnown RBP10.53□□□□□ -0.72
CD44-239ENST00000639002 TUSC1Q2TAM9 212 aa10.52□□□□□ -0.73
CD44-239ENST00000639002 MRGPRX2Q96LB1 330 aa10.52□□□□□ -0.73
CD44-239ENST00000639002 KDM4CQ9H3R0 1056 aa10.52□□□□□ -0.73
CD44-239ENST00000639002 ZBTB3Q9H5J0 574 aa10.52□□□□□ -0.73
CD44-239ENST00000639002 LILRB3O75022 631 aa10.51□□□□□ -0.73
CD44-239ENST00000639002 LYPD8Q6UX82 237 aa10.51□□□□□ -0.73
CD44-239ENST00000639002 KCNH2Q12809 1159 aa10.5□□□□□ -0.73
CD44-239ENST00000639002 RC3H1Q5TC82 1133 aaKnown RBP10.5□□□□□ -0.73
CD44-239ENST00000639002 CYP4X1Q8N118 509 aa10.5□□□□□ -0.73
CD44-239ENST00000639002 FAM117AQ9C073 453 aa10.5□□□□□ -0.73
CD44-239ENST00000639002 WNT7BP56706 349 aa10.49□□□□□ -0.73
CD44-239ENST00000639002 RTL5Q5HYW3 569 aaPredicted RBP10.49□□□□□ -0.73
CD44-239ENST00000639002 POLR3EQ9NVU0 708 aa10.49□□□□□ -0.73
CD44-239ENST00000639002 FBXO31Q5XUX0 539 aaPredicted RBP10.48□□□□□ -0.73
CD44-239ENST00000639002 UNC93B1Q9H1C4 597 aa10.48□□□□□ -0.73
CD44-239ENST00000639002 PLEKHG3A1L390 1219 aa10.47□□□□□ -0.73
CD44-239ENST00000639002 PER1O15534 1290 aaPredicted RBP10.47□□□□□ -0.73
CD44-239ENST00000639002 AVPP01185 164 aa10.47□□□□□ -0.73
CD44-239ENST00000639002 SMPD1P17405 629 aa10.47□□□□□ -0.73
CD44-239ENST00000639002 CLK2P49760 499 aaKnown RBP10.47□□□□□ -0.73
CD44-239ENST00000639002 SH3BP2P78314 561 aa10.47□□□□□ -0.73
CD44-239ENST00000639002 SNIP1Q8TAD8 396 aaKnown RBP10.47□□□□□ -0.73
CD44-239ENST00000639002 AAASQ9NRG9 546 aa10.47□□□□□ -0.73
CD44-239ENST00000639002 J3QL48 77 aa10.46□□□□□ -0.73
CD44-239ENST00000639002 ST8SIA5O15466 376 aa10.46□□□□□ -0.73
CD44-239ENST00000639002 RSPH6AQ9H0K4 717 aa10.46□□□□□ -0.73
CD44-239ENST00000639002 TTC24A2A3L6 582 aaPredicted RBP10.45□□□□□ -0.74
CD44-239ENST00000639002 SIAH2O43255 324 aa10.45□□□□□ -0.74
CD44-239ENST00000639002 F12P00748 615 aaPredicted RBP10.45□□□□□ -0.74
CD44-239ENST00000639002 BAP1Q92560 729 aa10.45□□□□□ -0.74
CD44-239ENST00000639002 POTECB2RU33 542 aa10.44□□□□□ -0.74
CD44-239ENST00000639002 MAP10Q9P2G4 905 aa10.44□□□□□ -0.74
CD44-239ENST00000639002 NUTM2BA6NNL0 878 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms