RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 TMEM132EQ6IEE7 984 aa26.31■■□□□ 1.8
CLN3-259ENST00000637551 ADGRB2O60241 1585 aa26.31■■□□□ 1.8
CLN3-259ENST00000637551 TRPM1Q7Z4N2 1603 aa26.3■■□□□ 1.8
CLN3-259ENST00000637551 RBM33Q96EV2 1170 aaKnown RBP26.3■■□□□ 1.8
CLN3-259ENST00000637551 TONSLQ96HA7 1378 aa26.3■■□□□ 1.8
CLN3-259ENST00000637551 MST1RQ04912 1400 aa26.3■■□□□ 1.8
CLN3-259ENST00000637551 TIMELESSQ9UNS1 1208 aa26.29■■□□□ 1.8
CLN3-259ENST00000637551 ARHGEF28Q8N1W1 1705 aaKnown RBP26.28■■□□□ 1.8
CLN3-259ENST00000637551 NEUROD1Q13562 356 aa26.27■■□□□ 1.8
CLN3-259ENST00000637551 AHDC1Q5TGY3 1603 aaPredicted RBP26.26■■□□□ 1.79
CLN3-259ENST00000637551 STK26Q9P289 416 aa26.25■■□□□ 1.79
CLN3-259ENST00000637551 FMN2Q9NZ56 1722 aa26.22■■□□□ 1.79
CLN3-259ENST00000637551 GPRASP1Q5JY77 1395 aa26.22■■□□□ 1.79
CLN3-259ENST00000637551 C1orf167Q5SNV9 1468 aa26.21■■□□□ 1.79
CLN3-259ENST00000637551 EIF3AQ14152 1382 aaKnown RBP26.2■■□□□ 1.79
CLN3-259ENST00000637551 UPF1Q92900 1129 aaKnown RBP eCLIP26.2■■□□□ 1.78
CLN3-259ENST00000637551 NHSL1Q5SYE7 1610 aa26.2■■□□□ 1.78
CLN3-259ENST00000637551 JCADQ9P266 1359 aa26.2■■□□□ 1.78
CLN3-259ENST00000637551 PLEKHH1Q9ULM0 1364 aa26.2■■□□□ 1.78
CLN3-259ENST00000637551 RALGAPBQ86X10 1494 aa26.18■■□□□ 1.78
CLN3-259ENST00000637551 WAPLQ7Z5K2 1190 aa26.18■■□□□ 1.78
CLN3-259ENST00000637551 PRAM1Q96QH2 718 aa26.18■■□□□ 1.78
CLN3-259ENST00000637551 PHLPP1O60346 1717 aa26.17■■□□□ 1.78
CLN3-259ENST00000637551 ANKARQ7Z5J8 1434 aa26.16■■□□□ 1.78
CLN3-259ENST00000637551 POGKQ9P215 609 aa26.16■■□□□ 1.78
CLN3-259ENST00000637551 BRINP3Q76B58 766 aa26.15■■□□□ 1.78
CLN3-259ENST00000637551 TRAK1Q9UPV9 953 aa26.15■■□□□ 1.78
CLN3-259ENST00000637551 KIF1AQ12756 1690 aa26.15■■□□□ 1.78
CLN3-259ENST00000637551 COL16A1Q07092 1604 aaPredicted RBP26.14■■□□□ 1.78
CLN3-259ENST00000637551 ROCK2O75116 1388 aaKnown RBP26.14■■□□□ 1.78
CLN3-259ENST00000637551 NBPF1Q3BBV0 1214 aa26.12■■□□□ 1.77
CLN3-259ENST00000637551 TULP4Q9NRJ4 1543 aa26.09■■□□□ 1.77
CLN3-259ENST00000637551 ZNF772Q68DY9 489 aaPredicted RBP26.08■■□□□ 1.77
CLN3-259ENST00000637551 LRP6O75581 1613 aa26.07■■□□□ 1.76
CLN3-259ENST00000637551 ITSN1Q15811 1721 aa26.07■■□□□ 1.76
CLN3-259ENST00000637551 SBNO2Q9Y2G9 1366 aa26.07■■□□□ 1.76
CLN3-259ENST00000637551 SHPRHQ149N8 1683 aa26.06■■□□□ 1.76
CLN3-259ENST00000637551 QRICH2Q9H0J4 1663 aa26.06■■□□□ 1.76
CLN3-259ENST00000637551 NBPF8Q3BBV2 869 aa26.06■■□□□ 1.76
CLN3-259ENST00000637551 SPATA31A6Q5VVP1 1343 aa26.06■■□□□ 1.76
CLN3-259ENST00000637551 CENPJQ9HC77 1338 aaPredicted RBP26.06■■□□□ 1.76
CLN3-259ENST00000637551 CCER1Q8TC90 406 aaPredicted RBP26.05■■□□□ 1.76
CLN3-259ENST00000637551 USP32Q8NFA0 1604 aa26.03■■□□□ 1.76
CLN3-259ENST00000637551 WASLO00401 505 aaPredicted RBP26.03■■□□□ 1.76
CLN3-259ENST00000637551 NPHP3Q7Z494 1330 aa26.03■■□□□ 1.76
CLN3-259ENST00000637551 SOS2Q07890 1332 aaPredicted RBP26.01■■□□□ 1.75
CLN3-259ENST00000637551 MEX3CQ5U5Q3 659 aaKnown RBP26.01■■□□□ 1.75
CLN3-259ENST00000637551 RGPD8O14715 1765 aaPredicted RBP26■■□□□ 1.75
CLN3-259ENST00000637551 SRCAPQ6ZRS2 3230 aa26■■□□□ 1.75
CLN3-259ENST00000637551 SAFB2Q14151 953 aaKnown RBP eCLIP25.99■■□□□ 1.75
CLN3-259ENST00000637551 ATP7BP35670 1465 aa25.98■■□□□ 1.75
CLN3-259ENST00000637551 MINK1Q8N4C8 1332 aaPredicted RBP25.98■■□□□ 1.75
CLN3-259ENST00000637551 SLC24A1O60721 1099 aa25.98■■□□□ 1.75
CLN3-259ENST00000637551 LRRC59Q96AG4 307 aaKnown RBP25.98■■□□□ 1.75
CLN3-259ENST00000637551 ORAI2Q96SN7 254 aa25.98■■□□□ 1.75
CLN3-259ENST00000637551 TOPAZ1Q8N9V7 1692 aa25.98■■□□□ 1.75
CLN3-259ENST00000637551 RXRBP28702 533 aa25.97■■□□□ 1.75
CLN3-259ENST00000637551 ESCO1Q5FWF5 840 aa25.97■■□□□ 1.75
CLN3-259ENST00000637551 CARD11Q9BXL7 1154 aa25.97■■□□□ 1.75
CLN3-259ENST00000637551 PXDNQ92626 1479 aa25.97■■□□□ 1.75
CLN3-259ENST00000637551 CDK12Q9NYV4 1490 aaPredicted RBP25.95■■□□□ 1.74
CLN3-259ENST00000637551 COL22A1Q8NFW1 1626 aaPredicted RBP25.93■■□□□ 1.74
CLN3-259ENST00000637551 PHF8Q9UPP1 1060 aa25.93■■□□□ 1.74
CLN3-259ENST00000637551 HIRIP3Q9BW71 556 aaPredicted RBP25.92■■□□□ 1.74
CLN3-259ENST00000637551 EVC2Q86UK5 1308 aa25.89■■□□□ 1.74
CLN3-259ENST00000637551 PRR36Q9H6K5 1346 aa25.88■■□□□ 1.73
CLN3-259ENST00000637551 SBNO1A3KN83 1393 aa25.88■■□□□ 1.73
CLN3-259ENST00000637551 CDK19Q9BWU1 502 aa25.88■■□□□ 1.73
CLN3-259ENST00000637551 CCDC61Q9Y6R9 512 aa25.88■■□□□ 1.73
CLN3-259ENST00000637551 PNPLA6Q8IY17 1366 aa25.87■■□□□ 1.73
CLN3-259ENST00000637551 PUS7Q96PZ0 661 aaKnown RBP25.87■■□□□ 1.73
CLN3-259ENST00000637551 POLR3AO14802 1390 aaPredicted RBP25.86■■□□□ 1.73
CLN3-259ENST00000637551 FOXO3O43524 673 aa25.86■■□□□ 1.73
CLN3-259ENST00000637551 NUDT16Q96DE0 195 aaKnown RBP25.86■■□□□ 1.73
CLN3-259ENST00000637551 BRD4O60885 1362 aaPredicted RBP25.85■■□□□ 1.73
CLN3-259ENST00000637551 NUTM2FA1L443 756 aa25.85■■□□□ 1.73
CLN3-259ENST00000637551 PSME1Q06323 249 aa25.85■■□□□ 1.73
CLN3-259ENST00000637551 TRPM3Q9HCF6 1732 aaPredicted RBP25.84■■□□□ 1.73
CLN3-259ENST00000637551 ATAD2Q6PL18 1390 aa25.83■■□□□ 1.73
CLN3-259ENST00000637551 PLEKHG3A1L390 1219 aa25.83■■□□□ 1.73
CLN3-259ENST00000637551 TNS3Q68CZ2 1445 aa25.82■■□□□ 1.72
CLN3-259ENST00000637551 ARHGEF10O15013 1369 aa25.82■■□□□ 1.72
CLN3-259ENST00000637551 NUTM2BA6NNL0 878 aaPredicted RBP25.81■■□□□ 1.72
CLN3-259ENST00000637551 NUTM2EB1AL46 878 aaPredicted RBP25.81■■□□□ 1.72
CLN3-259ENST00000637551 NUTM2AQ8IVF1 878 aaPredicted RBP25.81■■□□□ 1.72
CLN3-259ENST00000637551 AFF2P51816 1311 aa25.81■■□□□ 1.72
CLN3-259ENST00000637551 USP47Q96K76 1375 aa25.81■■□□□ 1.72
CLN3-259ENST00000637551 SRPK2P78362 688 aaKnown RBP25.8■■□□□ 1.72
CLN3-259ENST00000637551 SPATA31A3Q5VYP0 1347 aa25.8■■□□□ 1.72
CLN3-259ENST00000637551 DDX17Q92841 729 aaKnown RBP25.79■■□□□ 1.72
CLN3-259ENST00000637551 ALS2Q96Q42 1657 aa25.79■■□□□ 1.72
CLN3-259ENST00000637551 KRT28Q7Z3Y7 464 aa25.78■■□□□ 1.72
CLN3-259ENST00000637551 PPIP5K1Q6PFW1 1433 aa25.78■■□□□ 1.72
CLN3-259ENST00000637551 RGS12O14924 1447 aa25.77■■□□□ 1.72
CLN3-259ENST00000637551 NINLQ9Y2I6 1382 aa25.76■■□□□ 1.71
CLN3-259ENST00000637551 NGDNQ8NEJ9 315 aaKnown RBP25.75■■□□□ 1.71
CLN3-259ENST00000637551 TESK2Q96S53 571 aa25.75■■□□□ 1.71
CLN3-259ENST00000637551 RBM6P78332 1123 aaKnown RBP25.73■■□□□ 1.71
CLN3-259ENST00000637551 PMFBP1Q8TBY8 1022 aa25.73■■□□□ 1.71
CLN3-259ENST00000637551 MARF1Q9Y4F3 1742 aaKnown RBP25.73■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 432.9 ms