RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.59■■□□□ 1.21
CLN3-249ENST00000636685 SPHKAPQ2M3C7 1700 aa22.58■■□□□ 1.21
CLN3-249ENST00000636685 NUP155O75694 1391 aa22.57■■□□□ 1.2
CLN3-249ENST00000636685 ROBO2Q9HCK4 1378 aa22.57■■□□□ 1.2
CLN3-249ENST00000636685 RALGAPBQ86X10 1494 aa22.57■■□□□ 1.2
CLN3-249ENST00000636685 NEXMIFQ5QGS0 1516 aa22.56■■□□□ 1.2
CLN3-249ENST00000636685 SF3B2Q13435 895 aaKnown RBP22.55■■□□□ 1.2
CLN3-249ENST00000636685 PXDNQ92626 1479 aa22.54■■□□□ 1.2
CLN3-249ENST00000636685 PSDA5PKW4 1024 aaPredicted RBP22.54■■□□□ 1.2
CLN3-249ENST00000636685 XPCQ01831 940 aaPredicted RBP22.53■■□□□ 1.2
CLN3-249ENST00000636685 UNC5CLQ8IV45 518 aa22.53■■□□□ 1.2
CLN3-249ENST00000636685 NPHP3Q7Z494 1330 aa22.52■■□□□ 1.2
CLN3-249ENST00000636685 ESCO1Q5FWF5 840 aa22.51■■□□□ 1.19
CLN3-249ENST00000636685 HRCP23327 699 aa22.5■■□□□ 1.19
CLN3-249ENST00000636685 SLIT2O94813 1529 aa22.5■■□□□ 1.19
CLN3-249ENST00000636685 SEPT12Q8IYM1 358 aa22.49■■□□□ 1.19
CLN3-249ENST00000636685 FOXO3O43524 673 aa22.48■■□□□ 1.19
CLN3-249ENST00000636685 CLTCL1P53675 1640 aa22.48■■□□□ 1.19
CLN3-249ENST00000636685 ROCK1Q13464 1354 aa22.46■■□□□ 1.19
CLN3-249ENST00000636685 KIF1BO60333 1816 aa22.45■■□□□ 1.18
CLN3-249ENST00000636685 HFM1A2PYH4 1435 aa22.44■■□□□ 1.18
CLN3-249ENST00000636685 PRAG1Q86YV5 1406 aa22.43■■□□□ 1.18
CLN3-249ENST00000636685 CDC42BPGQ6DT37 1551 aa22.42■■□□□ 1.18
CLN3-249ENST00000636685 USP32Q8NFA0 1604 aa22.42■■□□□ 1.18
CLN3-249ENST00000636685 KRT27Q7Z3Y8 459 aa22.41■■□□□ 1.18
CLN3-249ENST00000636685 NUTM2FA1L443 756 aa22.4■■□□□ 1.18
CLN3-249ENST00000636685 BAG6P46379 1132 aa22.4■■□□□ 1.18
CLN3-249ENST00000636685 VPS72Q15906 364 aa22.39■■□□□ 1.17
CLN3-249ENST00000636685 LRPPRCP42704 1394 aaKnown RBP22.38■■□□□ 1.17
CLN3-249ENST00000636685 CCDC9Q9Y3X0 531 aaKnown RBP22.38■■□□□ 1.17
CLN3-249ENST00000636685 PLCH1Q4KWH8 1693 aa22.38■■□□□ 1.17
CLN3-249ENST00000636685 SPATA31A3Q5VYP0 1347 aa22.37■■□□□ 1.17
CLN3-249ENST00000636685 ONECUT3O60422 494 aaPredicted RBP22.37■■□□□ 1.17
CLN3-249ENST00000636685 VGFO15240 615 aaPredicted RBP22.36■■□□□ 1.17
CLN3-249ENST00000636685 NWD2Q9ULI1 1742 aa22.35■■□□□ 1.17
CLN3-249ENST00000636685 NAIPQ13075 1403 aa22.35■■□□□ 1.17
CLN3-249ENST00000636685 R3HDM1Q15032 1099 aaKnown RBP22.35■■□□□ 1.17
CLN3-249ENST00000636685 EN1Q05925 392 aaPredicted RBP22.34■■□□□ 1.17
CLN3-249ENST00000636685 ITGAEP38570 1179 aa22.33■■□□□ 1.17
CLN3-249ENST00000636685 PLEKHG5O94827 1062 aa22.32■■□□□ 1.16
CLN3-249ENST00000636685 HAP1P54257 671 aaPredicted RBP22.32■■□□□ 1.16
CLN3-249ENST00000636685 CABLES1Q8TDN4 633 aa22.32■■□□□ 1.16
CLN3-249ENST00000636685 A0A0G2JS52 829 aa22.31■■□□□ 1.16
CLN3-249ENST00000636685 MYT1Q01538 1121 aa22.31■■□□□ 1.16
CLN3-249ENST00000636685 RGPD1P0DJD0 1748 aa22.31■■□□□ 1.16
CLN3-249ENST00000636685 YY1P25490 414 aa22.3■■□□□ 1.16
CLN3-249ENST00000636685 KRT28Q7Z3Y7 464 aa22.3■■□□□ 1.16
CLN3-249ENST00000636685 PPLO60437 1756 aa22.3■■□□□ 1.16
CLN3-249ENST00000636685 WAPLQ7Z5K2 1190 aa22.29■■□□□ 1.16
CLN3-249ENST00000636685 CCDC144AA2RUR9 1427 aa22.29■■□□□ 1.16
CLN3-249ENST00000636685 KIF1AQ12756 1690 aa22.29■■□□□ 1.16
CLN3-249ENST00000636685 ABCA3Q99758 1704 aa22.28■■□□□ 1.16
CLN3-249ENST00000636685 FMN2Q9NZ56 1722 aa22.28■■□□□ 1.16
CLN3-249ENST00000636685 FAM98CQ17RN3 349 aaKnown RBP22.26■■□□□ 1.15
CLN3-249ENST00000636685 FAM182BQ5T319 152 aa22.26■■□□□ 1.15
CLN3-249ENST00000636685 STK26Q9P289 416 aa22.26■■□□□ 1.15
CLN3-249ENST00000636685 RGPD8O14715 1765 aaPredicted RBP22.25■■□□□ 1.15
CLN3-249ENST00000636685 TNS3Q68CZ2 1445 aa22.25■■□□□ 1.15
CLN3-249ENST00000636685 RPGRIP1LQ68CZ1 1315 aa22.25■■□□□ 1.15
CLN3-249ENST00000636685 NRAPQ86VF7 1730 aa22.24■■□□□ 1.15
CLN3-249ENST00000636685 TNS1Q9HBL0 1735 aaKnown RBP22.24■■□□□ 1.15
CLN3-249ENST00000636685 PLEKHH1Q9ULM0 1364 aa22.24■■□□□ 1.15
CLN3-249ENST00000636685 FAM83GA6ND36 823 aa22.23■■□□□ 1.15
CLN3-249ENST00000636685 EZH2Q15910 746 aaKnown RBP22.21■■□□□ 1.15
CLN3-249ENST00000636685 LMOD2Q6P5Q4 547 aa22.21■■□□□ 1.15
CLN3-249ENST00000636685 DISP2A7MBM2 1401 aa22.2■■□□□ 1.14
CLN3-249ENST00000636685 TECPR2O15040 1411 aa22.2■■□□□ 1.14
CLN3-249ENST00000636685 PSME1Q06323 249 aa22.19■■□□□ 1.14
CLN3-249ENST00000636685 KNDC1Q76NI1 1749 aa22.17■■□□□ 1.14
CLN3-249ENST00000636685 PHF8Q9UPP1 1060 aa22.17■■□□□ 1.14
CLN3-249ENST00000636685 IFT172Q9UG01 1749 aa22.17■■□□□ 1.14
CLN3-249ENST00000636685 ADGRF5Q8IZF2 1346 aa22.16■■□□□ 1.14
CLN3-249ENST00000636685 BTG4Q9NY30 223 aa22.16■■□□□ 1.14
CLN3-249ENST00000636685 SBNO1A3KN83 1393 aa22.15■■□□□ 1.14
CLN3-249ENST00000636685 TMEM132EQ6IEE7 984 aa22.15■■□□□ 1.14
CLN3-249ENST00000636685 ARHGEF10O15013 1369 aa22.14■■□□□ 1.14
CLN3-249ENST00000636685 ABCC11Q96J66 1382 aa22.14■■□□□ 1.14
CLN3-249ENST00000636685 CAMKK2Q96RR4 588 aa22.14■■□□□ 1.13
CLN3-249ENST00000636685 THSD7AQ9UPZ6 1657 aa22.13■■□□□ 1.13
CLN3-249ENST00000636685 NRXN1Q9ULB1 1477 aa22.12■■□□□ 1.13
CLN3-249ENST00000636685 COL14A1Q05707 1796 aaKnown RBP22.12■■□□□ 1.13
CLN3-249ENST00000636685 ADGRB2O60241 1585 aa22.11■■□□□ 1.13
CLN3-249ENST00000636685 SPATA31A5Q5VU36 1347 aa22.1■■□□□ 1.13
CLN3-249ENST00000636685 SPATA31A7Q8IWB4 1347 aa22.1■■□□□ 1.13
CLN3-249ENST00000636685 TRIM37O94972 964 aa22.1■■□□□ 1.13
CLN3-249ENST00000636685 RRBP1Q9P2E9 1410 aaKnown RBP22.1■■□□□ 1.13
CLN3-249ENST00000636685 RREB1Q92766 1687 aa22.07■■□□□ 1.12
CLN3-249ENST00000636685 NUP188Q5SRE5 1749 aa22.07■■□□□ 1.12
CLN3-249ENST00000636685 YTHDC2Q9H6S0 1430 aaKnown RBP22.06■■□□□ 1.12
CLN3-249ENST00000636685 APBA3O96018 575 aa22.06■■□□□ 1.12
CLN3-249ENST00000636685 TRPM3Q9HCF6 1732 aaPredicted RBP22.06■■□□□ 1.12
CLN3-249ENST00000636685 PMFBP1Q8TBY8 1022 aa22.05■■□□□ 1.12
CLN3-249ENST00000636685 PARD3Q8TEW0 1356 aa22.04■■□□□ 1.12
CLN3-249ENST00000636685 RGL3Q3MIN7 710 aa22.04■■□□□ 1.12
CLN3-249ENST00000636685 PPP1R1BQ9UD71 204 aaPredicted RBP22.04■■□□□ 1.12
CLN3-249ENST00000636685 FAM196AQ6ZSG2 479 aa22.03■■□□□ 1.12
CLN3-249ENST00000636685 ALS2Q96Q42 1657 aa22.03■■□□□ 1.12
CLN3-249ENST00000636685 CAMTA1Q9Y6Y1 1673 aa22.03■■□□□ 1.12
CLN3-249ENST00000636685 DCAF8L1A6NGE4 600 aa22.02■■□□□ 1.12
CLN3-249ENST00000636685 SLC4A1APQ9BWU0 796 aaKnown RBP22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms