RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 PIK3C2GO75747 1445 aa26.25■■□□□ 1.79
CLN3-243ENST00000635973 LRPPRCP42704 1394 aaKnown RBP26.25■■□□□ 1.79
CLN3-243ENST00000635973 KNDC1Q76NI1 1749 aa26.23■■□□□ 1.79
CLN3-243ENST00000635973 CDC42BPGQ6DT37 1551 aa26.23■■□□□ 1.79
CLN3-243ENST00000635973 ESCO1Q5FWF5 840 aa26.22■■□□□ 1.79
CLN3-243ENST00000635973 WAPLQ7Z5K2 1190 aa26.22■■□□□ 1.79
CLN3-243ENST00000635973 PNPLA6Q8IY17 1366 aa26.21■■□□□ 1.79
CLN3-243ENST00000635973 ABCC11Q96J66 1382 aa26.21■■□□□ 1.79
CLN3-243ENST00000635973 TECPR2O15040 1411 aa26.21■■□□□ 1.79
CLN3-243ENST00000635973 LAMC1P11047 1609 aa26.21■■□□□ 1.79
CLN3-243ENST00000635973 NEUROD1Q13562 356 aa26.2■■□□□ 1.78
CLN3-243ENST00000635973 SIN3AQ96ST3 1273 aa26.19■■□□□ 1.78
CLN3-243ENST00000635973 YTHDC2Q9H6S0 1430 aaKnown RBP26.19■■□□□ 1.78
CLN3-243ENST00000635973 C8orf37Q96NL8 207 aa26.18■■□□□ 1.78
CLN3-243ENST00000635973 C14orf93Q9H972 538 aaKnown RBP26.18■■□□□ 1.78
CLN3-243ENST00000635973 MYOM2P54296 1465 aa26.17■■□□□ 1.78
CLN3-243ENST00000635973 AFF2P51816 1311 aa26.17■■□□□ 1.78
CLN3-243ENST00000635973 SOS2Q07890 1332 aaPredicted RBP26.17■■□□□ 1.78
CLN3-243ENST00000635973 DCAF11Q8TEB1 546 aa26.17■■□□□ 1.78
CLN3-243ENST00000635973 NPHP3Q7Z494 1330 aa26.16■■□□□ 1.78
CLN3-243ENST00000635973 NUTM2FA1L443 756 aa26.16■■□□□ 1.78
CLN3-243ENST00000635973 RXRBP28702 533 aa26.16■■□□□ 1.78
CLN3-243ENST00000635973 CFAP70Q5T0N1 1121 aa26.15■■□□□ 1.78
CLN3-243ENST00000635973 KDM2AQ9Y2K7 1162 aa26.15■■□□□ 1.78
CLN3-243ENST00000635973 ADAMTS2O95450 1211 aa26.14■■□□□ 1.78
CLN3-243ENST00000635973 PLEKHH1Q9ULM0 1364 aa26.14■■□□□ 1.78
CLN3-243ENST00000635973 NRXN1Q9ULB1 1477 aa26.13■■□□□ 1.77
CLN3-243ENST00000635973 SIRT1Q96EB6 747 aa26.12■■□□□ 1.77
CLN3-243ENST00000635973 NGLY1Q96IV0 654 aa26.12■■□□□ 1.77
CLN3-243ENST00000635973 FOXO3O43524 673 aa26.11■■□□□ 1.77
CLN3-243ENST00000635973 FMN2Q9NZ56 1722 aa26.11■■□□□ 1.77
CLN3-243ENST00000635973 STAC3Q96MF2 364 aa26.1■■□□□ 1.77
CLN3-243ENST00000635973 UPF1Q92900 1129 aaKnown RBP eCLIP26.09■■□□□ 1.77
CLN3-243ENST00000635973 CDK12Q9NYV4 1490 aaPredicted RBP26.07■■□□□ 1.76
CLN3-243ENST00000635973 XPCQ01831 940 aaPredicted RBP26.07■■□□□ 1.76
CLN3-243ENST00000635973 CCER1Q8TC90 406 aaPredicted RBP26.07■■□□□ 1.76
CLN3-243ENST00000635973 QTRT2Q9H974 415 aaKnown RBP26.07■■□□□ 1.76
CLN3-243ENST00000635973 POGKQ9P215 609 aa26.07■■□□□ 1.76
CLN3-243ENST00000635973 SAFB2Q14151 953 aaKnown RBP eCLIP26.06■■□□□ 1.76
CLN3-243ENST00000635973 COL22A1Q8NFW1 1626 aaPredicted RBP26.06■■□□□ 1.76
CLN3-243ENST00000635973 TONSLQ96HA7 1378 aa26.06■■□□□ 1.76
CLN3-243ENST00000635973 KIF1AQ12756 1690 aa26.06■■□□□ 1.76
CLN3-243ENST00000635973 PRAM1Q96QH2 718 aa26.05■■□□□ 1.76
CLN3-243ENST00000635973 PXDNQ92626 1479 aa26.04■■□□□ 1.76
CLN3-243ENST00000635973 L3MBTL2Q969R5 705 aa26.04■■□□□ 1.76
CLN3-243ENST00000635973 RGPD8O14715 1765 aaPredicted RBP26.04■■□□□ 1.76
CLN3-243ENST00000635973 RBM6P78332 1123 aaKnown RBP26.02■■□□□ 1.76
CLN3-243ENST00000635973 CLSPNQ9HAW4 1339 aa26.02■■□□□ 1.76
CLN3-243ENST00000635973 USP21Q9UK80 565 aa26.01■■□□□ 1.75
CLN3-243ENST00000635973 DLC1Q96QB1 1528 aa26■■□□□ 1.75
CLN3-243ENST00000635973 RGS12O14924 1447 aa25.99■■□□□ 1.75
CLN3-243ENST00000635973 TRAK1Q9UPV9 953 aa25.99■■□□□ 1.75
CLN3-243ENST00000635973 MARF1Q9Y4F3 1742 aaKnown RBP25.98■■□□□ 1.75
CLN3-243ENST00000635973 KRT28Q7Z3Y7 464 aa25.98■■□□□ 1.75
CLN3-243ENST00000635973 PHF8Q9UPP1 1060 aa25.98■■□□□ 1.75
CLN3-243ENST00000635973 PSME1Q06323 249 aa25.97■■□□□ 1.75
CLN3-243ENST00000635973 TRPC5Q9UL62 973 aaPredicted RBP25.96■■□□□ 1.75
CLN3-243ENST00000635973 ADGRB1O14514 1584 aa25.95■■□□□ 1.75
CLN3-243ENST00000635973 SPATA31A3Q5VYP0 1347 aa25.93■■□□□ 1.74
CLN3-243ENST00000635973 HAP1P54257 671 aaPredicted RBP25.93■■□□□ 1.74
CLN3-243ENST00000635973 FNBP4Q8N3X1 1017 aaPredicted RBP25.93■■□□□ 1.74
CLN3-243ENST00000635973 MINK1Q8N4C8 1332 aaPredicted RBP25.91■■□□□ 1.74
CLN3-243ENST00000635973 HIRIP3Q9BW71 556 aaPredicted RBP25.91■■□□□ 1.74
CLN3-243ENST00000635973 ADGRB2O60241 1585 aa25.9■■□□□ 1.74
CLN3-243ENST00000635973 LMOD2Q6P5Q4 547 aa25.9■■□□□ 1.74
CLN3-243ENST00000635973 EIF3AQ14152 1382 aaKnown RBP25.9■■□□□ 1.74
CLN3-243ENST00000635973 ANKARQ7Z5J8 1434 aa25.89■■□□□ 1.74
CLN3-243ENST00000635973 KIAA1210Q9ULL0 1709 aa25.88■■□□□ 1.73
CLN3-243ENST00000635973 PMFBP1Q8TBY8 1022 aa25.88■■□□□ 1.73
CLN3-243ENST00000635973 PLEKHG5O94827 1062 aa25.87■■□□□ 1.73
CLN3-243ENST00000635973 TNS3Q68CZ2 1445 aa25.87■■□□□ 1.73
CLN3-243ENST00000635973 USP32Q8NFA0 1604 aa25.86■■□□□ 1.73
CLN3-243ENST00000635973 ATRNO75882 1429 aa25.85■■□□□ 1.73
CLN3-243ENST00000635973 SBNO1A3KN83 1393 aa25.84■■□□□ 1.73
CLN3-243ENST00000635973 ARHGEF10O15013 1369 aa25.83■■□□□ 1.73
CLN3-243ENST00000635973 ARHGEF28Q8N1W1 1705 aaKnown RBP25.83■■□□□ 1.73
CLN3-243ENST00000635973 WASLO00401 505 aaPredicted RBP25.83■■□□□ 1.73
CLN3-243ENST00000635973 GPRASP1Q5JY77 1395 aa25.82■■□□□ 1.72
CLN3-243ENST00000635973 BCL9LQ86UU0 1499 aa25.82■■□□□ 1.72
CLN3-243ENST00000635973 NBPF1Q3BBV0 1214 aa25.81■■□□□ 1.72
CLN3-243ENST00000635973 TULP4Q9NRJ4 1543 aa25.81■■□□□ 1.72
CLN3-243ENST00000635973 ROCK2O75116 1388 aaKnown RBP25.81■■□□□ 1.72
CLN3-243ENST00000635973 TRPM1Q7Z4N2 1603 aa25.81■■□□□ 1.72
CLN3-243ENST00000635973 CABLES1Q8TDN4 633 aa25.8■■□□□ 1.72
CLN3-243ENST00000635973 TIMELESSQ9UNS1 1208 aa25.8■■□□□ 1.72
CLN3-243ENST00000635973 ATAD2Q6PL18 1390 aa25.8■■□□□ 1.72
CLN3-243ENST00000635973 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.8■■□□□ 1.72
CLN3-243ENST00000635973 NBPF8Q3BBV2 869 aa25.79■■□□□ 1.72
CLN3-243ENST00000635973 UNC5CLQ8IV45 518 aa25.79■■□□□ 1.72
CLN3-243ENST00000635973 NGDNQ8NEJ9 315 aaKnown RBP25.79■■□□□ 1.72
CLN3-243ENST00000635973 GJD4Q96KN9 370 aaPredicted RBP25.79■■□□□ 1.72
CLN3-243ENST00000635973 ITSN1Q15811 1721 aa25.78■■□□□ 1.72
CLN3-243ENST00000635973 PRR36Q9H6K5 1346 aa25.76■■□□□ 1.71
CLN3-243ENST00000635973 ABCA3Q99758 1704 aa25.75■■□□□ 1.71
CLN3-243ENST00000635973 SLIT2O94813 1529 aa25.74■■□□□ 1.71
CLN3-243ENST00000635973 PAK3O75914 559 aaPredicted RBP25.74■■□□□ 1.71
CLN3-243ENST00000635973 TRPM3Q9HCF6 1732 aaPredicted RBP25.74■■□□□ 1.71
CLN3-243ENST00000635973 RALGAPBQ86X10 1494 aa25.73■■□□□ 1.71
CLN3-243ENST00000635973 PLCH1Q4KWH8 1693 aa25.72■■□□□ 1.71
CLN3-243ENST00000635973 NUDT16Q96DE0 195 aaKnown RBP25.72■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms