RNA–Protein interactions for RNA: ENST00000632758.1

LIMS4-203, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 1,580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-203ENST00000632758 POLR3GLQ9BT43 218 aa20.63■□□□□ 0.89
LIMS4-203ENST00000632758 SBNO2Q9Y2G9 1366 aa20.62■□□□□ 0.89
LIMS4-203ENST00000632758 KIF7Q2M1P5 1343 aa20.62■□□□□ 0.89
LIMS4-203ENST00000632758 NWD1Q149M9 1564 aa20.61■□□□□ 0.89
LIMS4-203ENST00000632758 QRICH2Q9H0J4 1663 aa20.6■□□□□ 0.89
LIMS4-203ENST00000632758 CCDC7Q96M83 1385 aa20.6■□□□□ 0.89
LIMS4-203ENST00000632758 SLC24A1O60721 1099 aa20.59■□□□□ 0.89
LIMS4-203ENST00000632758 STRCP1A6NGW2 1772 aa20.58■□□□□ 0.89
LIMS4-203ENST00000632758 CDK19Q9BWU1 502 aa20.58■□□□□ 0.88
LIMS4-203ENST00000632758 CABP2Q9NPB3 220 aa20.58■□□□□ 0.88
LIMS4-203ENST00000632758 EVC2Q86UK5 1308 aa20.57■□□□□ 0.88
LIMS4-203ENST00000632758 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.57■□□□□ 0.88
LIMS4-203ENST00000632758 WASLO00401 505 aaPredicted RBP20.56■□□□□ 0.88
LIMS4-203ENST00000632758 NKTRP30414 1462 aaKnown RBP20.56■□□□□ 0.88
LIMS4-203ENST00000632758 TULP4Q9NRJ4 1543 aa20.55■□□□□ 0.88
LIMS4-203ENST00000632758 SRPK2P78362 688 aaKnown RBP20.55■□□□□ 0.88
LIMS4-203ENST00000632758 TMEM94Q12767 1356 aa20.55■□□□□ 0.88
LIMS4-203ENST00000632758 DDX10Q13206 875 aaKnown RBP20.54■□□□□ 0.88
LIMS4-203ENST00000632758 CDCA8Q53HL2 280 aa20.54■□□□□ 0.88
LIMS4-203ENST00000632758 C14orf37Q86TY3 774 aa20.54■□□□□ 0.88
LIMS4-203ENST00000632758 NUTM2FA1L443 756 aa20.51■□□□□ 0.87
LIMS4-203ENST00000632758 LRRC7Q96NW7 1537 aa20.5■□□□□ 0.87
LIMS4-203ENST00000632758 PUS7Q96PZ0 661 aaKnown RBP20.5■□□□□ 0.87
LIMS4-203ENST00000632758 ADGRL3Q9HAR2 1447 aa20.49■□□□□ 0.87
LIMS4-203ENST00000632758 C19orf44Q9H6X5 657 aa20.48■□□□□ 0.87
LIMS4-203ENST00000632758 PRR36Q9H6K5 1346 aa20.48■□□□□ 0.87
LIMS4-203ENST00000632758 NUDT16Q96DE0 195 aaKnown RBP20.47■□□□□ 0.87
LIMS4-203ENST00000632758 ADGRB2O60241 1585 aa20.47■□□□□ 0.87
LIMS4-203ENST00000632758 TMC1Q8TDI8 760 aa20.46■□□□□ 0.87
LIMS4-203ENST00000632758 SLC12A5Q9H2X9 1139 aa20.46■□□□□ 0.87
LIMS4-203ENST00000632758 NCOA3Q9Y6Q9 1424 aa20.46■□□□□ 0.87
LIMS4-203ENST00000632758 NALCNQ8IZF0 1738 aa20.45■□□□□ 0.86
LIMS4-203ENST00000632758 LTBP4Q8N2S1 1624 aa20.45■□□□□ 0.86
LIMS4-203ENST00000632758 CABP1Q9NZU7 370 aa20.44■□□□□ 0.86
LIMS4-203ENST00000632758 ATAD2Q6PL18 1390 aa20.43■□□□□ 0.86
LIMS4-203ENST00000632758 PANK3Q9H999 370 aa20.42■□□□□ 0.86
LIMS4-203ENST00000632758 CCDC61Q9Y6R9 512 aa20.42■□□□□ 0.86
LIMS4-203ENST00000632758 ATF3P18847 181 aa20.41■□□□□ 0.86
LIMS4-203ENST00000632758 MSH6P52701 1360 aa20.4■□□□□ 0.86
LIMS4-203ENST00000632758 CDC42BPGQ6DT37 1551 aa20.4■□□□□ 0.86
LIMS4-203ENST00000632758 ATP7BP35670 1465 aa20.4■□□□□ 0.86
LIMS4-203ENST00000632758 XIRP1Q702N8 1843 aaKnown RBP20.39■□□□□ 0.86
LIMS4-203ENST00000632758 DIEXFQ68CQ4 756 aaKnown RBP20.38■□□□□ 0.85
LIMS4-203ENST00000632758 CADPS2Q86UW7 1296 aa20.38■□□□□ 0.85
LIMS4-203ENST00000632758 PPIP5K1Q6PFW1 1433 aa20.37■□□□□ 0.85
LIMS4-203ENST00000632758 PMFBP1Q8TBY8 1022 aa20.37■□□□□ 0.85
LIMS4-203ENST00000632758 USP32Q8NFA0 1604 aa20.36■□□□□ 0.85
LIMS4-203ENST00000632758 FMN2Q9NZ56 1722 aa20.36■□□□□ 0.85
LIMS4-203ENST00000632758 ANKARQ7Z5J8 1434 aa20.36■□□□□ 0.85
LIMS4-203ENST00000632758 ORAI2Q96SN7 254 aa20.36■□□□□ 0.85
LIMS4-203ENST00000632758 CARD14Q9BXL6 1004 aa20.36■□□□□ 0.85
LIMS4-203ENST00000632758 MYOM1P52179 1685 aa20.35■□□□□ 0.85
LIMS4-203ENST00000632758 DCCP43146 1447 aa20.35■□□□□ 0.85
LIMS4-203ENST00000632758 PLEKHG3A1L390 1219 aa20.35■□□□□ 0.85
LIMS4-203ENST00000632758 ESCO1Q5FWF5 840 aa20.35■□□□□ 0.85
LIMS4-203ENST00000632758 PER1O15534 1290 aaPredicted RBP20.34■□□□□ 0.85
LIMS4-203ENST00000632758 MST1RQ04912 1400 aa20.34■□□□□ 0.85
LIMS4-203ENST00000632758 NINLQ9Y2I6 1382 aa20.34■□□□□ 0.85
LIMS4-203ENST00000632758 C1orf167Q5SNV9 1468 aa20.33■□□□□ 0.84
LIMS4-203ENST00000632758 CD163L1Q9NR16 1453 aa20.33■□□□□ 0.84
LIMS4-203ENST00000632758 ACEP12821 1306 aa20.32■□□□□ 0.84
LIMS4-203ENST00000632758 A0A1W2PP64 1363 aa20.32■□□□□ 0.84
LIMS4-203ENST00000632758 ANKRD36BQ8N2N9 1353 aa20.32■□□□□ 0.84
LIMS4-203ENST00000632758 TERF2IPQ9NYB0 399 aa20.32■□□□□ 0.84
LIMS4-203ENST00000632758 PHF8Q9UPP1 1060 aa20.32■□□□□ 0.84
LIMS4-203ENST00000632758 HDGFL2Q7Z4V5 671 aaPredicted RBP20.31■□□□□ 0.84
LIMS4-203ENST00000632758 SLAIN2Q9P270 581 aa20.31■□□□□ 0.84
LIMS4-203ENST00000632758 NGDNQ8NEJ9 315 aaKnown RBP20.3■□□□□ 0.84
LIMS4-203ENST00000632758 RGPD8O14715 1765 aaPredicted RBP20.3■□□□□ 0.84
LIMS4-203ENST00000632758 CNGB1Q14028 1251 aaPredicted RBP20.29■□□□□ 0.84
LIMS4-203ENST00000632758 CPSF1Q10570 1443 aaKnown RBP20.29■□□□□ 0.84
LIMS4-203ENST00000632758 TOPAZ1Q8N9V7 1692 aa20.28■□□□□ 0.84
LIMS4-203ENST00000632758 ZNF692Q9BU19 519 aaPredicted RBP20.27■□□□□ 0.84
LIMS4-203ENST00000632758 KNSTRNQ9Y448 316 aa20.27■□□□□ 0.84
LIMS4-203ENST00000632758 CERKQ8TCT0 537 aa20.26■□□□□ 0.83
LIMS4-203ENST00000632758 POLR3AO14802 1390 aaPredicted RBP20.26■□□□□ 0.83
LIMS4-203ENST00000632758 KTN1Q86UP2 1357 aaKnown RBP20.26■□□□□ 0.83
LIMS4-203ENST00000632758 NSD3Q9BZ95 1437 aa20.26■□□□□ 0.83
LIMS4-203ENST00000632758 FOXO3O43524 673 aa20.25■□□□□ 0.83
LIMS4-203ENST00000632758 BRINP3Q76B58 766 aa20.25■□□□□ 0.83
LIMS4-203ENST00000632758 AMER1Q5JTC6 1135 aaPredicted RBP20.24■□□□□ 0.83
LIMS4-203ENST00000632758 DDX17Q92841 729 aaKnown RBP20.24■□□□□ 0.83
LIMS4-203ENST00000632758 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.23■□□□□ 0.83
LIMS4-203ENST00000632758 XPCQ01831 940 aaPredicted RBP20.22■□□□□ 0.83
LIMS4-203ENST00000632758 CC2D1BQ5T0F9 858 aaKnown RBP20.22■□□□□ 0.83
LIMS4-203ENST00000632758 ITSN1Q15811 1721 aa20.22■□□□□ 0.83
LIMS4-203ENST00000632758 PSME1Q06323 249 aa20.21■□□□□ 0.83
LIMS4-203ENST00000632758 USP6P35125 1406 aa20.21■□□□□ 0.83
LIMS4-203ENST00000632758 TTC21BQ7Z4L5 1316 aa20.21■□□□□ 0.83
LIMS4-203ENST00000632758 FYB1O15117 783 aa20.19■□□□□ 0.82
LIMS4-203ENST00000632758 TOM1O60784 492 aa20.19■□□□□ 0.82
LIMS4-203ENST00000632758 KRT28Q7Z3Y7 464 aa20.19■□□□□ 0.82
LIMS4-203ENST00000632758 EDC4Q6P2E9 1401 aaKnown RBP20.19■□□□□ 0.82
LIMS4-203ENST00000632758 SSH2Q76I76 1423 aa20.19■□□□□ 0.82
LIMS4-203ENST00000632758 CGNL1Q0VF96 1302 aa20.18■□□□□ 0.82
LIMS4-203ENST00000632758 UBAP1LF5GYI3 381 aa20.18■□□□□ 0.82
LIMS4-203ENST00000632758 ANP32CO43423 234 aa20.18■□□□□ 0.82
LIMS4-203ENST00000632758 NME9Q86XW9 330 aa20.18■□□□□ 0.82
LIMS4-203ENST00000632758 ZRANB1Q9UGI0 708 aa20.18■□□□□ 0.82
LIMS4-203ENST00000632758 MIER1Q8N108 512 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms