RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 YTHDC2Q9H6S0 1430 aaKnown RBP18.38■□□□□ 0.53
PNKP-217ENST00000625216 NALCNQ8IZF0 1738 aa18.36■□□□□ 0.53
PNKP-217ENST00000625216 DCAF11Q8TEB1 546 aa18.36■□□□□ 0.53
PNKP-217ENST00000625216 ORAI2Q96SN7 254 aa18.35■□□□□ 0.53
PNKP-217ENST00000625216 KDM2AQ9Y2K7 1162 aa18.34■□□□□ 0.53
PNKP-217ENST00000625216 SOS2Q07890 1332 aaPredicted RBP18.32■□□□□ 0.52
PNKP-217ENST00000625216 ESCO1Q5FWF5 840 aa18.32■□□□□ 0.52
PNKP-217ENST00000625216 MEX3CQ5U5Q3 659 aaKnown RBP18.32■□□□□ 0.52
PNKP-217ENST00000625216 DDX17Q92841 729 aaKnown RBP18.32■□□□□ 0.52
PNKP-217ENST00000625216 PLEKHH1Q9ULM0 1364 aa18.31■□□□□ 0.52
PNKP-217ENST00000625216 CDC42BPGQ6DT37 1551 aa18.31■□□□□ 0.52
PNKP-217ENST00000625216 POTEAQ6S8J7 498 aa18.3■□□□□ 0.52
PNKP-217ENST00000625216 LAMC1P11047 1609 aa18.3■□□□□ 0.52
PNKP-217ENST00000625216 NPHP3Q7Z494 1330 aa18.29■□□□□ 0.52
PNKP-217ENST00000625216 PRAM1Q96QH2 718 aa18.29■□□□□ 0.52
PNKP-217ENST00000625216 NHSL1Q5SYE7 1610 aa18.29■□□□□ 0.52
PNKP-217ENST00000625216 SHPRHQ149N8 1683 aa18.28■□□□□ 0.52
PNKP-217ENST00000625216 NUTM2BA6NNL0 878 aaPredicted RBP18.28■□□□□ 0.52
PNKP-217ENST00000625216 NUTM2EB1AL46 878 aaPredicted RBP18.28■□□□□ 0.52
PNKP-217ENST00000625216 ZNF772Q68DY9 489 aaPredicted RBP18.28■□□□□ 0.52
PNKP-217ENST00000625216 NUTM2AQ8IVF1 878 aaPredicted RBP18.28■□□□□ 0.52
PNKP-217ENST00000625216 POGKQ9P215 609 aa18.28■□□□□ 0.52
PNKP-217ENST00000625216 KNDC1Q76NI1 1749 aa18.28■□□□□ 0.52
PNKP-217ENST00000625216 PNPLA6Q8IY17 1366 aa18.27■□□□□ 0.51
PNKP-217ENST00000625216 LRP6O75581 1613 aa18.27■□□□□ 0.51
PNKP-217ENST00000625216 DLC1Q96QB1 1528 aa18.25■□□□□ 0.51
PNKP-217ENST00000625216 NUTM2FA1L443 756 aa18.25■□□□□ 0.51
PNKP-217ENST00000625216 FOXO3O43524 673 aa18.25■□□□□ 0.51
PNKP-217ENST00000625216 TRAK1Q9UPV9 953 aa18.25■□□□□ 0.51
PNKP-217ENST00000625216 CLSPNQ9HAW4 1339 aa18.24■□□□□ 0.51
PNKP-217ENST00000625216 ADGRB1O14514 1584 aa18.24■□□□□ 0.51
PNKP-217ENST00000625216 SAFB2Q14151 953 aaKnown RBP eCLIP18.23■□□□□ 0.51
PNKP-217ENST00000625216 PHF8Q9UPP1 1060 aa18.2■□□□□ 0.5
PNKP-217ENST00000625216 ZEB1P37275 1124 aaPredicted RBP18.18■□□□□ 0.5
PNKP-217ENST00000625216 PSME1Q06323 249 aa18.18■□□□□ 0.5
PNKP-217ENST00000625216 KRT28Q7Z3Y7 464 aa18.18■□□□□ 0.5
PNKP-217ENST00000625216 PXDNQ92626 1479 aa18.18■□□□□ 0.5
PNKP-217ENST00000625216 AFF2P51816 1311 aa18.18■□□□□ 0.5
PNKP-217ENST00000625216 EIF3AQ14152 1382 aaKnown RBP18.17■□□□□ 0.5
PNKP-217ENST00000625216 ANKARQ7Z5J8 1434 aa18.17■□□□□ 0.5
PNKP-217ENST00000625216 NGLY1Q96IV0 654 aa18.17■□□□□ 0.5
PNKP-217ENST00000625216 C8orf37Q96NL8 207 aa18.17■□□□□ 0.5
PNKP-217ENST00000625216 FMN2Q9NZ56 1722 aa18.16■□□□□ 0.5
PNKP-217ENST00000625216 ADAMTS2O95450 1211 aa18.16■□□□□ 0.5
PNKP-217ENST00000625216 RXRBP28702 533 aa18.16■□□□□ 0.5
PNKP-217ENST00000625216 XPCQ01831 940 aaPredicted RBP18.16■□□□□ 0.5
PNKP-217ENST00000625216 MINK1Q8N4C8 1332 aaPredicted RBP18.16■□□□□ 0.5
PNKP-217ENST00000625216 WASLO00401 505 aaPredicted RBP18.15■□□□□ 0.5
PNKP-217ENST00000625216 HIRIP3Q9BW71 556 aaPredicted RBP18.15■□□□□ 0.5
PNKP-217ENST00000625216 SPATA31A3Q5VYP0 1347 aa18.15■□□□□ 0.5
PNKP-217ENST00000625216 L3MBTL2Q969R5 705 aa18.13■□□□□ 0.49
PNKP-217ENST00000625216 ADGRB2O60241 1585 aa18.13■□□□□ 0.49
PNKP-217ENST00000625216 KIF1AQ12756 1690 aa18.12■□□□□ 0.49
PNKP-217ENST00000625216 FNBP4Q8N3X1 1017 aaPredicted RBP18.12■□□□□ 0.49
PNKP-217ENST00000625216 SIN3AQ96ST3 1273 aa18.12■□□□□ 0.49
PNKP-217ENST00000625216 QTRT2Q9H974 415 aaKnown RBP18.12■□□□□ 0.49
PNKP-217ENST00000625216 NBPF1Q3BBV0 1214 aa18.11■□□□□ 0.49
PNKP-217ENST00000625216 SBNO1A3KN83 1393 aa18.11■□□□□ 0.49
PNKP-217ENST00000625216 RBM6P78332 1123 aaKnown RBP18.1■□□□□ 0.49
PNKP-217ENST00000625216 PMFBP1Q8TBY8 1022 aa18.1■□□□□ 0.49
PNKP-217ENST00000625216 COL22A1Q8NFW1 1626 aaPredicted RBP18.09■□□□□ 0.49
PNKP-217ENST00000625216 NEUROD1Q13562 356 aa18.09■□□□□ 0.49
PNKP-217ENST00000625216 USP21Q9UK80 565 aa18.09■□□□□ 0.49
PNKP-217ENST00000625216 PRR36Q9H6K5 1346 aa18.08■□□□□ 0.49
PNKP-217ENST00000625216 KIAA1210Q9ULL0 1709 aa18.08■□□□□ 0.48
PNKP-217ENST00000625216 CDK12Q9NYV4 1490 aaPredicted RBP18.07■□□□□ 0.48
PNKP-217ENST00000625216 ARHGEF10O15013 1369 aa18.07■□□□□ 0.48
PNKP-217ENST00000625216 GPRASP1Q5JY77 1395 aa18.07■□□□□ 0.48
PNKP-217ENST00000625216 NUDT16Q96DE0 195 aaKnown RBP18.07■□□□□ 0.48
PNKP-217ENST00000625216 TRPC5Q9UL62 973 aaPredicted RBP18.07■□□□□ 0.48
PNKP-217ENST00000625216 TULP4Q9NRJ4 1543 aa18.07■□□□□ 0.48
PNKP-217ENST00000625216 TNS3Q68CZ2 1445 aa18.06■□□□□ 0.48
PNKP-217ENST00000625216 NGDNQ8NEJ9 315 aaKnown RBP18.06■□□□□ 0.48
PNKP-217ENST00000625216 CDK19Q9BWU1 502 aa18.06■□□□□ 0.48
PNKP-217ENST00000625216 HAP1P54257 671 aaPredicted RBP18.04■□□□□ 0.48
PNKP-217ENST00000625216 LMOD2Q6P5Q4 547 aa18.04■□□□□ 0.48
PNKP-217ENST00000625216 CCDC61Q9Y6R9 512 aa18.04■□□□□ 0.48
PNKP-217ENST00000625216 CENPJQ9HC77 1338 aaPredicted RBP18.03■□□□□ 0.48
PNKP-217ENST00000625216 USP32Q8NFA0 1604 aa18.02■□□□□ 0.48
PNKP-217ENST00000625216 ARHGEF28Q8N1W1 1705 aaKnown RBP18.01■□□□□ 0.47
PNKP-217ENST00000625216 RGPD8O14715 1765 aaPredicted RBP18.01■□□□□ 0.47
PNKP-217ENST00000625216 PLEKHG3A1L390 1219 aa18■□□□□ 0.47
PNKP-217ENST00000625216 CABLES1Q8TDN4 633 aa18■□□□□ 0.47
PNKP-217ENST00000625216 BCL9LQ86UU0 1499 aa18■□□□□ 0.47
PNKP-217ENST00000625216 ATRNO75882 1429 aa17.99■□□□□ 0.47
PNKP-217ENST00000625216 UNC5CLQ8IV45 518 aa17.99■□□□□ 0.47
PNKP-217ENST00000625216 ATP7BP35670 1465 aa17.99■□□□□ 0.47
PNKP-217ENST00000625216 ROCK2O75116 1388 aaKnown RBP17.97■□□□□ 0.47
PNKP-217ENST00000625216 PAK3O75914 559 aaPredicted RBP17.97■□□□□ 0.47
PNKP-217ENST00000625216 SRPK2P78362 688 aaKnown RBP17.97■□□□□ 0.47
PNKP-217ENST00000625216 NBPF8Q3BBV2 869 aa17.97■□□□□ 0.47
PNKP-217ENST00000625216 UPF1Q92900 1129 aaKnown RBP eCLIP17.97■□□□□ 0.47
PNKP-217ENST00000625216 GJD4Q96KN9 370 aaPredicted RBP17.97■□□□□ 0.47
PNKP-217ENST00000625216 SLIT2O94813 1529 aa17.97■□□□□ 0.47
PNKP-217ENST00000625216 POLR3AO14802 1390 aaPredicted RBP17.96■□□□□ 0.47
PNKP-217ENST00000625216 TONSLQ96HA7 1378 aa17.96■□□□□ 0.47
PNKP-217ENST00000625216 RGS12O14924 1447 aa17.96■□□□□ 0.47
PNKP-217ENST00000625216 ACEP12821 1306 aa17.96■□□□□ 0.46
PNKP-217ENST00000625216 PLEKHG5O94827 1062 aa17.94■□□□□ 0.46
PNKP-217ENST00000625216 EVC2Q86UK5 1308 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms