RNA–Protein interactions for RNA: ENST00000621757.1

COL8A1-208, Transcript of collagen type VIII alpha 1 chain, humanhuman

TSL 3

Gene COL8A1, Length 948 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-208ENST00000621757 NEUROD1Q13562 356 aa17.43■□□□□ 0.38
COL8A1-208ENST00000621757 RGS17Q9UGC6 210 aaPredicted RBP17.42■□□□□ 0.38
COL8A1-208ENST00000621757 PHLPP1O60346 1717 aa17.41■□□□□ 0.38
COL8A1-208ENST00000621757 WAPLQ7Z5K2 1190 aa17.41■□□□□ 0.38
COL8A1-208ENST00000621757 L3MBTL2Q969R5 705 aa17.4■□□□□ 0.38
COL8A1-208ENST00000621757 ARHGEF28Q8N1W1 1705 aaKnown RBP17.4■□□□□ 0.38
COL8A1-208ENST00000621757 AHDC1Q5TGY3 1603 aaPredicted RBP17.39■□□□□ 0.37
COL8A1-208ENST00000621757 C1orf167Q5SNV9 1468 aa17.38■□□□□ 0.37
COL8A1-208ENST00000621757 COL16A1Q07092 1604 aaPredicted RBP17.38■□□□□ 0.37
COL8A1-208ENST00000621757 NHSL1Q5SYE7 1610 aa17.37■□□□□ 0.37
COL8A1-208ENST00000621757 TRPM1Q7Z4N2 1603 aa17.37■□□□□ 0.37
COL8A1-208ENST00000621757 FMN2Q9NZ56 1722 aa17.37■□□□□ 0.37
COL8A1-208ENST00000621757 BRINP3Q76B58 766 aa17.36■□□□□ 0.37
COL8A1-208ENST00000621757 SIRT1Q96EB6 747 aa17.36■□□□□ 0.37
COL8A1-208ENST00000621757 PRAM1Q96QH2 718 aa17.36■□□□□ 0.37
COL8A1-208ENST00000621757 TRAK1Q9UPV9 953 aa17.36■□□□□ 0.37
COL8A1-208ENST00000621757 ADGRB2O60241 1585 aa17.36■□□□□ 0.37
COL8A1-208ENST00000621757 SAFB2Q14151 953 aaKnown RBP eCLIP17.34■□□□□ 0.37
COL8A1-208ENST00000621757 TONSLQ96HA7 1378 aa17.34■□□□□ 0.37
COL8A1-208ENST00000621757 NBPF1Q3BBV0 1214 aa17.32■□□□□ 0.36
COL8A1-208ENST00000621757 POGKQ9P215 609 aa17.32■□□□□ 0.36
COL8A1-208ENST00000621757 POTEAQ6S8J7 498 aa17.31■□□□□ 0.36
COL8A1-208ENST00000621757 RGPD8O14715 1765 aaPredicted RBP17.28■□□□□ 0.36
COL8A1-208ENST00000621757 NUTM2FA1L443 756 aa17.28■□□□□ 0.36
COL8A1-208ENST00000621757 ORAI2Q96SN7 254 aa17.28■□□□□ 0.36
COL8A1-208ENST00000621757 SHPRHQ149N8 1683 aa17.28■□□□□ 0.36
COL8A1-208ENST00000621757 USP32Q8NFA0 1604 aa17.28■□□□□ 0.36
COL8A1-208ENST00000621757 MINK1Q8N4C8 1332 aaPredicted RBP17.27■□□□□ 0.36
COL8A1-208ENST00000621757 KIF1AQ12756 1690 aa17.27■□□□□ 0.36
COL8A1-208ENST00000621757 DDX17Q92841 729 aaKnown RBP17.27■□□□□ 0.36
COL8A1-208ENST00000621757 ROCK2O75116 1388 aaKnown RBP17.27■□□□□ 0.35
COL8A1-208ENST00000621757 JCADQ9P266 1359 aa17.27■□□□□ 0.35
COL8A1-208ENST00000621757 QRICH2Q9H0J4 1663 aa17.26■□□□□ 0.35
COL8A1-208ENST00000621757 NBPF8Q3BBV2 869 aa17.26■□□□□ 0.35
COL8A1-208ENST00000621757 HIRIP3Q9BW71 556 aaPredicted RBP17.26■□□□□ 0.35
COL8A1-208ENST00000621757 RALGAPBQ86X10 1494 aa17.25■□□□□ 0.35
COL8A1-208ENST00000621757 ESCO1Q5FWF5 840 aa17.25■□□□□ 0.35
COL8A1-208ENST00000621757 TULP4Q9NRJ4 1543 aa17.25■□□□□ 0.35
COL8A1-208ENST00000621757 ANKARQ7Z5J8 1434 aa17.24■□□□□ 0.35
COL8A1-208ENST00000621757 CLSPNQ9HAW4 1339 aa17.23■□□□□ 0.35
COL8A1-208ENST00000621757 GPRASP1Q5JY77 1395 aa17.23■□□□□ 0.35
COL8A1-208ENST00000621757 EIF3AQ14152 1382 aaKnown RBP17.22■□□□□ 0.35
COL8A1-208ENST00000621757 PXDNQ92626 1479 aa17.22■□□□□ 0.35
COL8A1-208ENST00000621757 CENPJQ9HC77 1338 aaPredicted RBP17.21■□□□□ 0.34
COL8A1-208ENST00000621757 ATP7BP35670 1465 aa17.2■□□□□ 0.34
COL8A1-208ENST00000621757 WASLO00401 505 aaPredicted RBP17.2■□□□□ 0.34
COL8A1-208ENST00000621757 ITSN1Q15811 1721 aa17.2■□□□□ 0.34
COL8A1-208ENST00000621757 LRP6O75581 1613 aa17.2■□□□□ 0.34
COL8A1-208ENST00000621757 SOS2Q07890 1332 aaPredicted RBP17.2■□□□□ 0.34
COL8A1-208ENST00000621757 NPHP3Q7Z494 1330 aa17.2■□□□□ 0.34
COL8A1-208ENST00000621757 TOPAZ1Q8N9V7 1692 aa17.2■□□□□ 0.34
COL8A1-208ENST00000621757 PRR36Q9H6K5 1346 aa17.19■□□□□ 0.34
COL8A1-208ENST00000621757 PNPLA6Q8IY17 1366 aa17.18■□□□□ 0.34
COL8A1-208ENST00000621757 CCER1Q8TC90 406 aaPredicted RBP17.18■□□□□ 0.34
COL8A1-208ENST00000621757 FOXO3O43524 673 aa17.17■□□□□ 0.34
COL8A1-208ENST00000621757 XPCQ01831 940 aaPredicted RBP17.17■□□□□ 0.34
COL8A1-208ENST00000621757 LRRC59Q96AG4 307 aaKnown RBP17.17■□□□□ 0.34
COL8A1-208ENST00000621757 PHF8Q9UPP1 1060 aa17.17■□□□□ 0.34
COL8A1-208ENST00000621757 SPATA31A6Q5VVP1 1343 aa17.17■□□□□ 0.34
COL8A1-208ENST00000621757 COL22A1Q8NFW1 1626 aaPredicted RBP17.16■□□□□ 0.34
COL8A1-208ENST00000621757 CARD11Q9BXL7 1154 aa17.15■□□□□ 0.34
COL8A1-208ENST00000621757 CDK19Q9BWU1 502 aa17.14■□□□□ 0.33
COL8A1-208ENST00000621757 PMFBP1Q8TBY8 1022 aa17.13■□□□□ 0.33
COL8A1-208ENST00000621757 TRPM3Q9HCF6 1732 aaPredicted RBP17.13■□□□□ 0.33
COL8A1-208ENST00000621757 NUDT16Q96DE0 195 aaKnown RBP17.11■□□□□ 0.33
COL8A1-208ENST00000621757 TNS3Q68CZ2 1445 aa17.11■□□□□ 0.33
COL8A1-208ENST00000621757 NUTM2BA6NNL0 878 aaPredicted RBP17.1■□□□□ 0.33
COL8A1-208ENST00000621757 NUTM2EB1AL46 878 aaPredicted RBP17.1■□□□□ 0.33
COL8A1-208ENST00000621757 MEX3CQ5U5Q3 659 aaKnown RBP17.1■□□□□ 0.33
COL8A1-208ENST00000621757 NUTM2AQ8IVF1 878 aaPredicted RBP17.1■□□□□ 0.33
COL8A1-208ENST00000621757 TIMELESSQ9UNS1 1208 aa17.1■□□□□ 0.33
COL8A1-208ENST00000621757 SRPK2P78362 688 aaKnown RBP17.09■□□□□ 0.33
COL8A1-208ENST00000621757 KRT28Q7Z3Y7 464 aa17.09■□□□□ 0.33
COL8A1-208ENST00000621757 SBNO2Q9Y2G9 1366 aa17.09■□□□□ 0.33
COL8A1-208ENST00000621757 SBNO1A3KN83 1393 aa17.08■□□□□ 0.32
COL8A1-208ENST00000621757 SPATA31A3Q5VYP0 1347 aa17.08■□□□□ 0.32
COL8A1-208ENST00000621757 CABP2Q9NPB3 220 aa17.08■□□□□ 0.32
COL8A1-208ENST00000621757 ABCA3Q99758 1704 aa17.07■□□□□ 0.32
COL8A1-208ENST00000621757 ALS2Q96Q42 1657 aa17.07■□□□□ 0.32
COL8A1-208ENST00000621757 PPIP5K1Q6PFW1 1433 aa17.07■□□□□ 0.32
COL8A1-208ENST00000621757 EVC2Q86UK5 1308 aa17.07■□□□□ 0.32
COL8A1-208ENST00000621757 PSME1Q06323 249 aa17.07■□□□□ 0.32
COL8A1-208ENST00000621757 ZNF772Q68DY9 489 aaPredicted RBP17.06■□□□□ 0.32
COL8A1-208ENST00000621757 NGDNQ8NEJ9 315 aaKnown RBP17.06■□□□□ 0.32
COL8A1-208ENST00000621757 CCDC61Q9Y6R9 512 aa17.06■□□□□ 0.32
COL8A1-208ENST00000621757 POLR3AO14802 1390 aaPredicted RBP17.05■□□□□ 0.32
COL8A1-208ENST00000621757 MARF1Q9Y4F3 1742 aaKnown RBP17.04■□□□□ 0.32
COL8A1-208ENST00000621757 ARHGEF10O15013 1369 aa17.03■□□□□ 0.32
COL8A1-208ENST00000621757 USP47Q96K76 1375 aa17.03■□□□□ 0.32
COL8A1-208ENST00000621757 ACEP12821 1306 aa17.03■□□□□ 0.32
COL8A1-208ENST00000621757 PLEKHG3A1L390 1219 aa17.02■□□□□ 0.32
COL8A1-208ENST00000621757 ADAMTS2O95450 1211 aa17.02■□□□□ 0.32
COL8A1-208ENST00000621757 CRYBG1Q9Y4K1 1723 aa17.01■□□□□ 0.31
COL8A1-208ENST00000621757 LMOD2Q6P5Q4 547 aa17.01■□□□□ 0.31
COL8A1-208ENST00000621757 C8orf37Q96NL8 207 aa17.01■□□□□ 0.31
COL8A1-208ENST00000621757 ATAD2Q6PL18 1390 aa17.01■□□□□ 0.31
COL8A1-208ENST00000621757 ST20-MTHFSA0A0A6YYL1 179 aa17■□□□□ 0.31
COL8A1-208ENST00000621757 UPF1Q92900 1129 aaKnown RBP eCLIP17■□□□□ 0.31
COL8A1-208ENST00000621757 AKAP12Q02952 1782 aa17■□□□□ 0.31
COL8A1-208ENST00000621757 AFF2P51816 1311 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms