RNA–Protein interactions for RNA: ENST00000618856.1

NEK3-209, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-209ENST00000618856 C14orf37Q86TY3 774 aa11.95□□□□□ -0.5
NEK3-209ENST00000618856 PCGF6Q9BYE7 350 aa11.95□□□□□ -0.5
NEK3-209ENST00000618856 STK26Q9P289 416 aa11.95□□□□□ -0.5
NEK3-209ENST00000618856 C1orf167Q5SNV9 1468 aa11.95□□□□□ -0.5
NEK3-209ENST00000618856 ADGRB2O60241 1585 aa11.94□□□□□ -0.5
NEK3-209ENST00000618856 BRINP3Q76B58 766 aa11.94□□□□□ -0.5
NEK3-209ENST00000618856 SCAF1Q9H7N4 1312 aaKnown RBP11.93□□□□□ -0.5
NEK3-209ENST00000618856 CLSPNQ9HAW4 1339 aa11.93□□□□□ -0.5
NEK3-209ENST00000618856 ARHGEF28Q8N1W1 1705 aaKnown RBP11.93□□□□□ -0.5
NEK3-209ENST00000618856 COL16A1Q07092 1604 aaPredicted RBP11.93□□□□□ -0.5
NEK3-209ENST00000618856 NHSL1Q5SYE7 1610 aa11.93□□□□□ -0.5
NEK3-209ENST00000618856 TRPM1Q7Z4N2 1603 aa11.93□□□□□ -0.5
NEK3-209ENST00000618856 FMN2Q9NZ56 1722 aa11.92□□□□□ -0.5
NEK3-209ENST00000618856 NEUROD1Q13562 356 aa11.92□□□□□ -0.5
NEK3-209ENST00000618856 NBPF1Q3BBV0 1214 aa11.92□□□□□ -0.5
NEK3-209ENST00000618856 PRAM1Q96QH2 718 aa11.92□□□□□ -0.5
NEK3-209ENST00000618856 GPRASP1Q5JY77 1395 aa11.92□□□□□ -0.5
NEK3-209ENST00000618856 PHLPP1O60346 1717 aa11.9□□□□□ -0.5
NEK3-209ENST00000618856 NBPF8Q3BBV2 869 aa11.9□□□□□ -0.5
NEK3-209ENST00000618856 TRAK1Q9UPV9 953 aa11.9□□□□□ -0.5
NEK3-209ENST00000618856 ORAI2Q96SN7 254 aa11.88□□□□□ -0.51
NEK3-209ENST00000618856 TIMELESSQ9UNS1 1208 aa11.88□□□□□ -0.51
NEK3-209ENST00000618856 USP32Q8NFA0 1604 aa11.88□□□□□ -0.51
NEK3-209ENST00000618856 ANKARQ7Z5J8 1434 aa11.87□□□□□ -0.51
NEK3-209ENST00000618856 POGKQ9P215 609 aa11.87□□□□□ -0.51
NEK3-209ENST00000618856 TONSLQ96HA7 1378 aa11.87□□□□□ -0.51
NEK3-209ENST00000618856 RALGAPBQ86X10 1494 aa11.87□□□□□ -0.51
NEK3-209ENST00000618856 SOS2Q07890 1332 aaPredicted RBP11.86□□□□□ -0.51
NEK3-209ENST00000618856 JCADQ9P266 1359 aa11.86□□□□□ -0.51
NEK3-209ENST00000618856 SHPRHQ149N8 1683 aa11.86□□□□□ -0.51
NEK3-209ENST00000618856 MED1Q15648 1581 aaPredicted RBP11.85□□□□□ -0.51
NEK3-209ENST00000618856 PXDNQ92626 1479 aa11.85□□□□□ -0.51
NEK3-209ENST00000618856 WASLO00401 505 aaPredicted RBP11.85□□□□□ -0.51
NEK3-209ENST00000618856 TULP4Q9NRJ4 1543 aa11.85□□□□□ -0.51
NEK3-209ENST00000618856 KIF1AQ12756 1690 aa11.84□□□□□ -0.51
NEK3-209ENST00000618856 ROCK2O75116 1388 aaKnown RBP11.83□□□□□ -0.52
NEK3-209ENST00000618856 EIF3AQ14152 1382 aaKnown RBP11.83□□□□□ -0.52
NEK3-209ENST00000618856 SAFB2Q14151 953 aaKnown RBP eCLIP11.83□□□□□ -0.52
NEK3-209ENST00000618856 MINK1Q8N4C8 1332 aaPredicted RBP11.83□□□□□ -0.52
NEK3-209ENST00000618856 PRR36Q9H6K5 1346 aa11.83□□□□□ -0.52
NEK3-209ENST00000618856 CENPJQ9HC77 1338 aaPredicted RBP11.83□□□□□ -0.52
NEK3-209ENST00000618856 ATP7BP35670 1465 aa11.83□□□□□ -0.52
NEK3-209ENST00000618856 RGPD8O14715 1765 aaPredicted RBP11.82□□□□□ -0.52
NEK3-209ENST00000618856 ESCO1Q5FWF5 840 aa11.82□□□□□ -0.52
NEK3-209ENST00000618856 DDX17Q92841 729 aaKnown RBP11.82□□□□□ -0.52
NEK3-209ENST00000618856 LRRC59Q96AG4 307 aaKnown RBP11.82□□□□□ -0.52
NEK3-209ENST00000618856 SPATA31A6Q5VVP1 1343 aa11.82□□□□□ -0.52
NEK3-209ENST00000618856 NPHP3Q7Z494 1330 aa11.82□□□□□ -0.52
NEK3-209ENST00000618856 SBNO2Q9Y2G9 1366 aa11.81□□□□□ -0.52
NEK3-209ENST00000618856 HIRIP3Q9BW71 556 aaPredicted RBP11.81□□□□□ -0.52
NEK3-209ENST00000618856 COL22A1Q8NFW1 1626 aaPredicted RBP11.81□□□□□ -0.52
NEK3-209ENST00000618856 TOPAZ1Q8N9V7 1692 aa11.81□□□□□ -0.52
NEK3-209ENST00000618856 QRICH2Q9H0J4 1663 aa11.81□□□□□ -0.52
NEK3-209ENST00000618856 PNPLA6Q8IY17 1366 aa11.8□□□□□ -0.52
NEK3-209ENST00000618856 NUTM2FA1L443 756 aa11.8□□□□□ -0.52
NEK3-209ENST00000618856 PHF8Q9UPP1 1060 aa11.8□□□□□ -0.52
NEK3-209ENST00000618856 LRP6O75581 1613 aa11.79□□□□□ -0.52
NEK3-209ENST00000618856 FOXO3O43524 673 aa11.79□□□□□ -0.52
NEK3-209ENST00000618856 CDK19Q9BWU1 502 aa11.79□□□□□ -0.52
NEK3-209ENST00000618856 SBNO1A3KN83 1393 aa11.78□□□□□ -0.52
NEK3-209ENST00000618856 ITSN1Q15811 1721 aa11.77□□□□□ -0.52
NEK3-209ENST00000618856 PLEKHG3A1L390 1219 aa11.77□□□□□ -0.53
NEK3-209ENST00000618856 NUDT16Q96DE0 195 aaKnown RBP11.77□□□□□ -0.53
NEK3-209ENST00000618856 CARD11Q9BXL7 1154 aa11.77□□□□□ -0.53
NEK3-209ENST00000618856 SPATA31A3Q5VYP0 1347 aa11.77□□□□□ -0.53
NEK3-209ENST00000618856 POLR3AO14802 1390 aaPredicted RBP11.77□□□□□ -0.53
NEK3-209ENST00000618856 DISP3Q9P2K9 1392 aa11.77□□□□□ -0.53
NEK3-209ENST00000618856 TRPM3Q9HCF6 1732 aaPredicted RBP11.77□□□□□ -0.53
NEK3-209ENST00000618856 RGS17Q9UGC6 210 aaPredicted RBP11.76□□□□□ -0.53
NEK3-209ENST00000618856 CCDC61Q9Y6R9 512 aa11.76□□□□□ -0.53
NEK3-209ENST00000618856 KRT28Q7Z3Y7 464 aa11.75□□□□□ -0.53
NEK3-209ENST00000618856 CCER1Q8TC90 406 aaPredicted RBP11.75□□□□□ -0.53
NEK3-209ENST00000618856 TNS3Q68CZ2 1445 aa11.74□□□□□ -0.53
NEK3-209ENST00000618856 ALS2Q96Q42 1657 aa11.74□□□□□ -0.53
NEK3-209ENST00000618856 PSME1Q06323 249 aa11.73□□□□□ -0.53
NEK3-209ENST00000618856 EVC2Q86UK5 1308 aa11.73□□□□□ -0.53
NEK3-209ENST00000618856 PMFBP1Q8TBY8 1022 aa11.73□□□□□ -0.53
NEK3-209ENST00000618856 PUS7Q96PZ0 661 aaKnown RBP11.73□□□□□ -0.53
NEK3-209ENST00000618856 TESK2Q96S53 571 aa11.73□□□□□ -0.53
NEK3-209ENST00000618856 XPCQ01831 940 aaPredicted RBP11.72□□□□□ -0.53
NEK3-209ENST00000618856 CABP2Q9NPB3 220 aa11.72□□□□□ -0.53
NEK3-209ENST00000618856 PPIP5K1Q6PFW1 1433 aa11.71□□□□□ -0.53
NEK3-209ENST00000618856 SSH2Q76I76 1423 aa11.71□□□□□ -0.53
NEK3-209ENST00000618856 BRD4O60885 1362 aaPredicted RBP11.71□□□□□ -0.53
NEK3-209ENST00000618856 ARHGEF10O15013 1369 aa11.7□□□□□ -0.54
NEK3-209ENST00000618856 ACEP12821 1306 aa11.7□□□□□ -0.54
NEK3-209ENST00000618856 ST20-MTHFSA0A0A6YYL1 179 aa11.7□□□□□ -0.54
NEK3-209ENST00000618856 SRPK2P78362 688 aaKnown RBP11.7□□□□□ -0.54
NEK3-209ENST00000618856 CPSF1Q10570 1443 aaKnown RBP11.69□□□□□ -0.54
NEK3-209ENST00000618856 CRYBG1Q9Y4K1 1723 aa11.69□□□□□ -0.54
NEK3-209ENST00000618856 ATAD2Q6PL18 1390 aa11.69□□□□□ -0.54
NEK3-209ENST00000618856 USP47Q96K76 1375 aa11.69□□□□□ -0.54
NEK3-209ENST00000618856 SLC24A1O60721 1099 aa11.69□□□□□ -0.54
NEK3-209ENST00000618856 ILDR2Q71H61 639 aa11.69□□□□□ -0.54
NEK3-209ENST00000618856 ABCA3Q99758 1704 aa11.69□□□□□ -0.54
NEK3-209ENST00000618856 MARF1Q9Y4F3 1742 aaKnown RBP11.69□□□□□ -0.54
NEK3-209ENST00000618856 FNBP4Q8N3X1 1017 aaPredicted RBP11.68□□□□□ -0.54
NEK3-209ENST00000618856 NGDNQ8NEJ9 315 aaKnown RBP11.68□□□□□ -0.54
NEK3-209ENST00000618856 CABP1Q9NZU7 370 aa11.68□□□□□ -0.54
NEK3-209ENST00000618856 CD163L1Q9NR16 1453 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms