RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 PNPLA6Q8IY17 1366 aa23.41■■□□□ 1.34
BRCA1-228ENST00000618469 RBM6P78332 1123 aaKnown RBP23.41■■□□□ 1.34
BRCA1-228ENST00000618469 NRXN1Q9ULB1 1477 aa23.41■■□□□ 1.34
BRCA1-228ENST00000618469 PRAG1Q86YV5 1406 aa23.41■■□□□ 1.34
BRCA1-228ENST00000618469 NGLY1Q96IV0 654 aa23.4■■□□□ 1.34
BRCA1-228ENST00000618469 DCCP43146 1447 aa23.4■■□□□ 1.34
BRCA1-228ENST00000618469 ADGRL3Q9HAR2 1447 aa23.38■■□□□ 1.33
BRCA1-228ENST00000618469 KNDC1Q76NI1 1749 aa23.38■■□□□ 1.33
BRCA1-228ENST00000618469 ROBO2Q9HCK4 1378 aa23.37■■□□□ 1.33
BRCA1-228ENST00000618469 SRCAPQ6ZRS2 3230 aa23.33■■□□□ 1.33
BRCA1-228ENST00000618469 TRIM26Q12899 539 aaPredicted RBP23.33■■□□□ 1.33
BRCA1-228ENST00000618469 TECPR2O15040 1411 aa23.32■■□□□ 1.32
BRCA1-228ENST00000618469 LRPPRCP42704 1394 aaKnown RBP23.31■■□□□ 1.32
BRCA1-228ENST00000618469 ORAI2Q96SN7 254 aa23.31■■□□□ 1.32
BRCA1-228ENST00000618469 USP21Q9UK80 565 aa23.31■■□□□ 1.32
BRCA1-228ENST00000618469 TMEM132EQ6IEE7 984 aa23.29■■□□□ 1.32
BRCA1-228ENST00000618469 YTHDC2Q9H6S0 1430 aaKnown RBP23.29■■□□□ 1.32
BRCA1-228ENST00000618469 C1orf167Q5SNV9 1468 aa23.29■■□□□ 1.32
BRCA1-228ENST00000618469 DHX57Q6P158 1386 aaKnown RBP23.28■■□□□ 1.32
BRCA1-228ENST00000618469 DCAF11Q8TEB1 546 aa23.28■■□□□ 1.32
BRCA1-228ENST00000618469 STK26Q9P289 416 aa23.28■■□□□ 1.32
BRCA1-228ENST00000618469 CFAP70Q5T0N1 1121 aa23.27■■□□□ 1.32
BRCA1-228ENST00000618469 C14orf93Q9H972 538 aaKnown RBP23.27■■□□□ 1.32
BRCA1-228ENST00000618469 KDM2AQ9Y2K7 1162 aa23.27■■□□□ 1.32
BRCA1-228ENST00000618469 CDC42BPGQ6DT37 1551 aa23.27■■□□□ 1.32
BRCA1-228ENST00000618469 ATAD2Q6PL18 1390 aa23.27■■□□□ 1.31
BRCA1-228ENST00000618469 ADGRB1O14514 1584 aa23.26■■□□□ 1.31
BRCA1-228ENST00000618469 ABCC11Q96J66 1382 aa23.25■■□□□ 1.31
BRCA1-228ENST00000618469 TRPC5Q9UL62 973 aaPredicted RBP23.23■■□□□ 1.31
BRCA1-228ENST00000618469 ZRANB1Q9UGI0 708 aa23.22■■□□□ 1.31
BRCA1-228ENST00000618469 PLEKHH1Q9ULM0 1364 aa23.22■■□□□ 1.31
BRCA1-228ENST00000618469 SOS2Q07890 1332 aaPredicted RBP23.21■■□□□ 1.31
BRCA1-228ENST00000618469 XPCQ01831 940 aaPredicted RBP23.2■■□□□ 1.3
BRCA1-228ENST00000618469 DLC1Q96QB1 1528 aa23.19■■□□□ 1.3
BRCA1-228ENST00000618469 STAC3Q96MF2 364 aa23.19■■□□□ 1.3
BRCA1-228ENST00000618469 WAPLQ7Z5K2 1190 aa23.18■■□□□ 1.3
BRCA1-228ENST00000618469 FNBP4Q8N3X1 1017 aaPredicted RBP23.18■■□□□ 1.3
BRCA1-228ENST00000618469 ATRNO75882 1429 aa23.17■■□□□ 1.3
BRCA1-228ENST00000618469 KIAA1210Q9ULL0 1709 aa23.17■■□□□ 1.3
BRCA1-228ENST00000618469 FMN2Q9NZ56 1722 aa23.16■■□□□ 1.3
BRCA1-228ENST00000618469 EP400Q96L91 3159 aa23.15■■□□□ 1.3
BRCA1-228ENST00000618469 ARHGEF28Q8N1W1 1705 aaKnown RBP23.14■■□□□ 1.3
BRCA1-228ENST00000618469 SIN3AQ96ST3 1273 aa23.14■■□□□ 1.29
BRCA1-228ENST00000618469 NUTM2FA1L443 756 aa23.13■■□□□ 1.29
BRCA1-228ENST00000618469 ESCO1Q5FWF5 840 aa23.13■■□□□ 1.29
BRCA1-228ENST00000618469 COL22A1Q8NFW1 1626 aaPredicted RBP23.11■■□□□ 1.29
BRCA1-228ENST00000618469 BCL9LQ86UU0 1499 aa23.11■■□□□ 1.29
BRCA1-228ENST00000618469 NEUROD1Q13562 356 aa23.11■■□□□ 1.29
BRCA1-228ENST00000618469 SIRT1Q96EB6 747 aa23.11■■□□□ 1.29
BRCA1-228ENST00000618469 PRAM1Q96QH2 718 aa23.11■■□□□ 1.29
BRCA1-228ENST00000618469 MARF1Q9Y4F3 1742 aaKnown RBP23.11■■□□□ 1.29
BRCA1-228ENST00000618469 ADGRB2O60241 1585 aa23.1■■□□□ 1.29
BRCA1-228ENST00000618469 SAFB2Q14151 953 aaKnown RBP eCLIP23.1■■□□□ 1.29
BRCA1-228ENST00000618469 TRAK1Q9UPV9 953 aa23.1■■□□□ 1.29
BRCA1-228ENST00000618469 FOXO3O43524 673 aa23.09■■□□□ 1.29
BRCA1-228ENST00000618469 GJD4Q96KN9 370 aaPredicted RBP23.08■■□□□ 1.29
BRCA1-228ENST00000618469 POGKQ9P215 609 aa23.08■■□□□ 1.29
BRCA1-228ENST00000618469 PLEKHG5O94827 1062 aa23.07■■□□□ 1.28
BRCA1-228ENST00000618469 L3MBTL2Q969R5 705 aa23.07■■□□□ 1.28
BRCA1-228ENST00000618469 KIF1AQ12756 1690 aa23.06■■□□□ 1.28
BRCA1-228ENST00000618469 PXDNQ92626 1479 aa23.05■■□□□ 1.28
BRCA1-228ENST00000618469 TRPM1Q7Z4N2 1603 aa23.05■■□□□ 1.28
BRCA1-228ENST00000618469 DEFB132Q7Z7B7 95 aa23.05■■□□□ 1.28
BRCA1-228ENST00000618469 NPHP3Q7Z494 1330 aa23.05■■□□□ 1.28
BRCA1-228ENST00000618469 BRWD3Q6RI45 1802 aa23.04■■□□□ 1.28
BRCA1-228ENST00000618469 RGPD8O14715 1765 aaPredicted RBP23.04■■□□□ 1.28
BRCA1-228ENST00000618469 CCDC125Q86Z20 511 aa23.03■■□□□ 1.28
BRCA1-228ENST00000618469 USP32Q8NFA0 1604 aa23.01■■□□□ 1.27
BRCA1-228ENST00000618469 GLI3P10071 1580 aa23.01■■□□□ 1.27
BRCA1-228ENST00000618469 RALGAPBQ86X10 1494 aa23■■□□□ 1.27
BRCA1-228ENST00000618469 MINK1Q8N4C8 1332 aaPredicted RBP23■■□□□ 1.27
BRCA1-228ENST00000618469 NBPF1Q3BBV0 1214 aa22.99■■□□□ 1.27
BRCA1-228ENST00000618469 HIRIP3Q9BW71 556 aaPredicted RBP22.99■■□□□ 1.27
BRCA1-228ENST00000618469 UNC5CLQ8IV45 518 aa22.98■■□□□ 1.27
BRCA1-228ENST00000618469 TONSLQ96HA7 1378 aa22.98■■□□□ 1.27
BRCA1-228ENST00000618469 TULP4Q9NRJ4 1543 aa22.98■■□□□ 1.27
BRCA1-228ENST00000618469 ANKARQ7Z5J8 1434 aa22.97■■□□□ 1.27
BRCA1-228ENST00000618469 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.96■■□□□ 1.27
BRCA1-228ENST00000618469 BLMP54132 1417 aaPredicted RBP22.95■■□□□ 1.26
BRCA1-228ENST00000618469 EIF3AQ14152 1382 aaKnown RBP22.95■■□□□ 1.26
BRCA1-228ENST00000618469 CABLES1Q8TDN4 633 aa22.95■■□□□ 1.26
BRCA1-228ENST00000618469 PCGF6Q9BYE7 350 aa22.95■■□□□ 1.26
BRCA1-228ENST00000618469 QRICH2Q9H0J4 1663 aa22.95■■□□□ 1.26
BRCA1-228ENST00000618469 ITSN1Q15811 1721 aa22.94■■□□□ 1.26
BRCA1-228ENST00000618469 SEPT12Q8IYM1 358 aa22.93■■□□□ 1.26
BRCA1-228ENST00000618469 CCDC9Q9Y3X0 531 aaKnown RBP22.93■■□□□ 1.26
BRCA1-228ENST00000618469 SLIT2O94813 1529 aa22.92■■□□□ 1.26
BRCA1-228ENST00000618469 ROCK2O75116 1388 aaKnown RBP22.92■■□□□ 1.26
BRCA1-228ENST00000618469 PSDA5PKW4 1024 aaPredicted RBP22.92■■□□□ 1.26
BRCA1-228ENST00000618469 HAP1P54257 671 aaPredicted RBP22.92■■□□□ 1.26
BRCA1-228ENST00000618469 SPATA31A3Q5VYP0 1347 aa22.91■■□□□ 1.26
BRCA1-228ENST00000618469 SF3B2Q13435 895 aaKnown RBP22.91■■□□□ 1.26
BRCA1-228ENST00000618469 KRT28Q7Z3Y7 464 aa22.9■■□□□ 1.26
BRCA1-228ENST00000618469 PHF8Q9UPP1 1060 aa22.9■■□□□ 1.26
BRCA1-228ENST00000618469 ATP7BP35670 1465 aa22.9■■□□□ 1.26
BRCA1-228ENST00000618469 WASLO00401 505 aaPredicted RBP22.89■■□□□ 1.25
BRCA1-228ENST00000618469 PRR36Q9H6K5 1346 aa22.88■■□□□ 1.25
BRCA1-228ENST00000618469 TOPAZ1Q8N9V7 1692 aa22.88■■□□□ 1.25
BRCA1-228ENST00000618469 LMOD2Q6P5Q4 547 aa22.88■■□□□ 1.25
BRCA1-228ENST00000618469 CENPJQ9HC77 1338 aaPredicted RBP22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms