RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 CDC42BPGQ6DT37 1551 aa28.01■■■□□ 2.07
CCDC28A-203ENST00000617445 YTHDC2Q9H6S0 1430 aaKnown RBP28.01■■■□□ 2.07
CCDC28A-203ENST00000617445 STAC3Q96MF2 364 aa28■■■□□ 2.07
CCDC28A-203ENST00000617445 LRP6O75581 1613 aa28■■■□□ 2.07
CCDC28A-203ENST00000617445 ORAI2Q96SN7 254 aa27.99■■■□□ 2.07
CCDC28A-203ENST00000617445 WAPLQ7Z5K2 1190 aa27.98■■■□□ 2.07
CCDC28A-203ENST00000617445 DHX57Q6P158 1386 aaKnown RBP27.98■■■□□ 2.07
CCDC28A-203ENST00000617445 ZNF772Q68DY9 489 aaPredicted RBP27.97■■■□□ 2.07
CCDC28A-203ENST00000617445 DDX17Q92841 729 aaKnown RBP27.96■■■□□ 2.07
CCDC28A-203ENST00000617445 SOS2Q07890 1332 aaPredicted RBP27.95■■■□□ 2.07
CCDC28A-203ENST00000617445 CFAP70Q5T0N1 1121 aa27.95■■■□□ 2.06
CCDC28A-203ENST00000617445 NUTM2BA6NNL0 878 aaPredicted RBP27.94■■■□□ 2.06
CCDC28A-203ENST00000617445 NUTM2EB1AL46 878 aaPredicted RBP27.94■■■□□ 2.06
CCDC28A-203ENST00000617445 NUTM2AQ8IVF1 878 aaPredicted RBP27.94■■■□□ 2.06
CCDC28A-203ENST00000617445 PNPLA6Q8IY17 1366 aa27.93■■■□□ 2.06
CCDC28A-203ENST00000617445 ESCO1Q5FWF5 840 aa27.92■■■□□ 2.06
CCDC28A-203ENST00000617445 NPHP3Q7Z494 1330 aa27.91■■■□□ 2.06
CCDC28A-203ENST00000617445 PLEKHH1Q9ULM0 1364 aa27.9■■■□□ 2.06
CCDC28A-203ENST00000617445 DCAF11Q8TEB1 546 aa27.88■■■□□ 2.05
CCDC28A-203ENST00000617445 KDM2AQ9Y2K7 1162 aa27.85■■■□□ 2.05
CCDC28A-203ENST00000617445 DLC1Q96QB1 1528 aa27.85■■■□□ 2.05
CCDC28A-203ENST00000617445 FMN2Q9NZ56 1722 aa27.84■■■□□ 2.05
CCDC28A-203ENST00000617445 FOXO3O43524 673 aa27.82■■■□□ 2.04
CCDC28A-203ENST00000617445 PRAM1Q96QH2 718 aa27.82■■■□□ 2.04
CCDC28A-203ENST00000617445 POGKQ9P215 609 aa27.81■■■□□ 2.04
CCDC28A-203ENST00000617445 AFF2P51816 1311 aa27.81■■■□□ 2.04
CCDC28A-203ENST00000617445 ADGRB1O14514 1584 aa27.81■■■□□ 2.04
CCDC28A-203ENST00000617445 NUTM2FA1L443 756 aa27.8■■■□□ 2.04
CCDC28A-203ENST00000617445 PXDNQ92626 1479 aa27.79■■■□□ 2.04
CCDC28A-203ENST00000617445 KIF1AQ12756 1690 aa27.78■■■□□ 2.04
CCDC28A-203ENST00000617445 RXRBP28702 533 aa27.78■■■□□ 2.04
CCDC28A-203ENST00000617445 C8orf37Q96NL8 207 aa27.78■■■□□ 2.04
CCDC28A-203ENST00000617445 COL22A1Q8NFW1 1626 aaPredicted RBP27.78■■■□□ 2.04
CCDC28A-203ENST00000617445 NGLY1Q96IV0 654 aa27.75■■■□□ 2.03
CCDC28A-203ENST00000617445 TRAK1Q9UPV9 953 aa27.75■■■□□ 2.03
CCDC28A-203ENST00000617445 ADAMTS2O95450 1211 aa27.74■■■□□ 2.03
CCDC28A-203ENST00000617445 SAFB2Q14151 953 aaKnown RBP eCLIP27.74■■■□□ 2.03
CCDC28A-203ENST00000617445 PHF8Q9UPP1 1060 aa27.73■■■□□ 2.03
CCDC28A-203ENST00000617445 CDK12Q9NYV4 1490 aaPredicted RBP27.72■■■□□ 2.03
CCDC28A-203ENST00000617445 ADGRB2O60241 1585 aa27.71■■■□□ 2.03
CCDC28A-203ENST00000617445 XPCQ01831 940 aaPredicted RBP27.71■■■□□ 2.03
CCDC28A-203ENST00000617445 ANKARQ7Z5J8 1434 aa27.71■■■□□ 2.03
CCDC28A-203ENST00000617445 QTRT2Q9H974 415 aaKnown RBP27.71■■■□□ 2.03
CCDC28A-203ENST00000617445 RGPD8O14715 1765 aaPredicted RBP27.71■■■□□ 2.03
CCDC28A-203ENST00000617445 PSME1Q06323 249 aa27.7■■■□□ 2.02
CCDC28A-203ENST00000617445 EIF3AQ14152 1382 aaKnown RBP27.7■■■□□ 2.02
CCDC28A-203ENST00000617445 KRT28Q7Z3Y7 464 aa27.69■■■□□ 2.02
CCDC28A-203ENST00000617445 SPATA31A3Q5VYP0 1347 aa27.68■■■□□ 2.02
CCDC28A-203ENST00000617445 RBM6P78332 1123 aaKnown RBP27.68■■■□□ 2.02
CCDC28A-203ENST00000617445 FNBP4Q8N3X1 1017 aaPredicted RBP27.67■■■□□ 2.02
CCDC28A-203ENST00000617445 KIAA1210Q9ULL0 1709 aa27.64■■■□□ 2.02
CCDC28A-203ENST00000617445 USP21Q9UK80 565 aa27.64■■■□□ 2.02
CCDC28A-203ENST00000617445 MINK1Q8N4C8 1332 aaPredicted RBP27.63■■■□□ 2.01
CCDC28A-203ENST00000617445 SBNO1A3KN83 1393 aa27.62■■■□□ 2.01
CCDC28A-203ENST00000617445 WASLO00401 505 aaPredicted RBP27.62■■■□□ 2.01
CCDC28A-203ENST00000617445 TRPC5Q9UL62 973 aaPredicted RBP27.62■■■□□ 2.01
CCDC28A-203ENST00000617445 MARF1Q9Y4F3 1742 aaKnown RBP27.61■■■□□ 2.01
CCDC28A-203ENST00000617445 HIRIP3Q9BW71 556 aaPredicted RBP27.61■■■□□ 2.01
CCDC28A-203ENST00000617445 USP32Q8NFA0 1604 aa27.59■■■□□ 2.01
CCDC28A-203ENST00000617445 TNS3Q68CZ2 1445 aa27.59■■■□□ 2.01
CCDC28A-203ENST00000617445 ARHGEF28Q8N1W1 1705 aaKnown RBP27.59■■■□□ 2.01
CCDC28A-203ENST00000617445 TULP4Q9NRJ4 1543 aa27.58■■■□□ 2.01
CCDC28A-203ENST00000617445 PMFBP1Q8TBY8 1022 aa27.57■■■□□ 2
CCDC28A-203ENST00000617445 ARHGEF10O15013 1369 aa27.57■■■□□ 2
CCDC28A-203ENST00000617445 ATRNO75882 1429 aa27.54■■■□□ 2
CCDC28A-203ENST00000617445 GPRASP1Q5JY77 1395 aa27.54■■■□□ 2
CCDC28A-203ENST00000617445 PRR36Q9H6K5 1346 aa27.53■■■□□ 2
CCDC28A-203ENST00000617445 UPF1Q92900 1129 aaKnown RBP eCLIP27.53■■■□□ 2
CCDC28A-203ENST00000617445 BCL9LQ86UU0 1499 aa27.52■■■□□ 2
CCDC28A-203ENST00000617445 RGS12O14924 1447 aa27.52■■■□□ 2
CCDC28A-203ENST00000617445 HAP1P54257 671 aaPredicted RBP27.52■■■□□ 2
CCDC28A-203ENST00000617445 NBPF1Q3BBV0 1214 aa27.5■■□□□ 1.99
CCDC28A-203ENST00000617445 LMOD2Q6P5Q4 547 aa27.5■■□□□ 1.99
CCDC28A-203ENST00000617445 NGDNQ8NEJ9 315 aaKnown RBP27.49■■□□□ 1.99
CCDC28A-203ENST00000617445 ITSN1Q15811 1721 aa27.48■■□□□ 1.99
CCDC28A-203ENST00000617445 UNC5CLQ8IV45 518 aa27.48■■□□□ 1.99
CCDC28A-203ENST00000617445 L3MBTL2Q969R5 705 aa27.48■■□□□ 1.99
CCDC28A-203ENST00000617445 NUDT16Q96DE0 195 aaKnown RBP27.48■■□□□ 1.99
CCDC28A-203ENST00000617445 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.47■■□□□ 1.99
CCDC28A-203ENST00000617445 CDK19Q9BWU1 502 aa27.47■■□□□ 1.99
CCDC28A-203ENST00000617445 SLIT2O94813 1529 aa27.46■■□□□ 1.99
CCDC28A-203ENST00000617445 TRPM3Q9HCF6 1732 aaPredicted RBP27.46■■□□□ 1.99
CCDC28A-203ENST00000617445 CABLES1Q8TDN4 633 aa27.45■■□□□ 1.98
CCDC28A-203ENST00000617445 GJD4Q96KN9 370 aaPredicted RBP27.45■■□□□ 1.98
CCDC28A-203ENST00000617445 ATP7BP35670 1465 aa27.44■■□□□ 1.98
CCDC28A-203ENST00000617445 SIN3AQ96ST3 1273 aa27.43■■□□□ 1.98
CCDC28A-203ENST00000617445 CCDC61Q9Y6R9 512 aa27.43■■□□□ 1.98
CCDC28A-203ENST00000617445 ALS2Q96Q42 1657 aa27.42■■□□□ 1.98
CCDC28A-203ENST00000617445 CENPJQ9HC77 1338 aaPredicted RBP27.41■■□□□ 1.98
CCDC28A-203ENST00000617445 ABCA3Q99758 1704 aa27.41■■□□□ 1.98
CCDC28A-203ENST00000617445 NEUROD1Q13562 356 aa27.4■■□□□ 1.98
CCDC28A-203ENST00000617445 ATAD2Q6PL18 1390 aa27.39■■□□□ 1.98
CCDC28A-203ENST00000617445 NWD2Q9ULI1 1742 aa27.38■■□□□ 1.97
CCDC28A-203ENST00000617445 PLEKHG3A1L390 1219 aa27.38■■□□□ 1.97
CCDC28A-203ENST00000617445 POLR3AO14802 1390 aaPredicted RBP27.37■■□□□ 1.97
CCDC28A-203ENST00000617445 PAK3O75914 559 aaPredicted RBP27.37■■□□□ 1.97
CCDC28A-203ENST00000617445 PLEKHG5O94827 1062 aa27.36■■□□□ 1.97
CCDC28A-203ENST00000617445 VPS72Q15906 364 aa27.36■■□□□ 1.97
CCDC28A-203ENST00000617445 FAM83GA6ND36 823 aa27.35■■□□□ 1.97
CCDC28A-203ENST00000617445 TOPAZ1Q8N9V7 1692 aa27.35■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms