RNA–Protein interactions for RNA: ENST00000616010.4

CCND3-223, Transcript of cyclin D3, human

TSL 5 BASIC

Gene CCND3, Length 2,047 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCND3-223	ENST00000616010	CHD2	O14647	1828 aa	Known RBP	32.43	■■■□□ 2.78
CCND3-223	ENST00000616010	MYOM1	P52179	1685 aa		32.43	■■■□□ 2.78
CCND3-223	ENST00000616010	PTCH1	Q13635	1447 aa		32.43	■■■□□ 2.78
CCND3-223	ENST00000616010	SIRT1	Q96EB6	747 aa		32.43	■■■□□ 2.78
CCND3-223	ENST00000616010	EVC2	Q86UK5	1308 aa		32.42	■■■□□ 2.78
CCND3-223	ENST00000616010	STRC	Q7RTU9	1775 aa		32.37	■■■□□ 2.77
CCND3-223	ENST00000616010	KCNA6	P17658	529 aa		32.36	■■■□□ 2.77
CCND3-223	ENST00000616010	MIER1	Q8N108	512 aa		32.35	■■■□□ 2.77
CCND3-223	ENST00000616010	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.33	■■■□□ 2.77
CCND3-223	ENST00000616010	CABP2	Q9NPB3	220 aa		32.31	■■■□□ 2.76
CCND3-223	ENST00000616010	ADGRB2	O60241	1585 aa		32.31	■■■□□ 2.76
CCND3-223	ENST00000616010	NWD1	Q149M9	1564 aa		32.31	■■■□□ 2.76
CCND3-223	ENST00000616010	SRPK2	P78362	688 aa	Known RBP	32.31	■■■□□ 2.76
CCND3-223	ENST00000616010	PUS7	Q96PZ0	661 aa	Known RBP	32.28	■■■□□ 2.76
CCND3-223	ENST00000616010	CDK19	Q9BWU1	502 aa		32.27	■■■□□ 2.76
CCND3-223	ENST00000616010	PANK3	Q9H999	370 aa		32.26	■■■□□ 2.76
CCND3-223	ENST00000616010	ANP32C	O43423	234 aa		32.26	■■■□□ 2.75
CCND3-223	ENST00000616010	ATAD2	Q6PL18	1390 aa		32.24	■■■□□ 2.75
CCND3-223	ENST00000616010	WASL	O00401	505 aa	Predicted RBP	32.24	■■■□□ 2.75
CCND3-223	ENST00000616010	TMC1	Q8TDI8	760 aa		32.22	■■■□□ 2.75
CCND3-223	ENST00000616010	NALCN	Q8IZF0	1738 aa		32.19	■■■□□ 2.74
CCND3-223	ENST00000616010	SLC12A5	Q9H2X9	1139 aa		32.19	■■■□□ 2.74
CCND3-223	ENST00000616010	NKTR	P30414	1462 aa	Known RBP	32.18	■■■□□ 2.74
CCND3-223	ENST00000616010	STRCP1	A6NGW2	1772 aa		32.17	■■■□□ 2.74
CCND3-223	ENST00000616010	NINL	Q9Y2I6	1382 aa		32.17	■■■□□ 2.74
CCND3-223	ENST00000616010	PER1	O15534	1290 aa	Predicted RBP	32.16	■■■□□ 2.74
CCND3-223	ENST00000616010	RBM33	Q96EV2	1170 aa	Known RBP	32.14	■■■□□ 2.74
CCND3-223	ENST00000616010	ATP7B	P35670	1465 aa		32.13	■■■□□ 2.73
CCND3-223	ENST00000616010	CNGB1	Q14028	1251 aa	Predicted RBP	32.13	■■■□□ 2.73
CCND3-223	ENST00000616010	ANKRD36B	Q8N2N9	1353 aa		32.11	■■■□□ 2.73
CCND3-223	ENST00000616010	PRKRIP1	Q9H875	184 aa	Predicted RBP	32.1	■■■□□ 2.73
CCND3-223	ENST00000616010	ADGRL3	Q9HAR2	1447 aa		32.1	■■■□□ 2.73
CCND3-223	ENST00000616010	CDC42BPG	Q6DT37	1551 aa		32.1	■■■□□ 2.73
CCND3-223	ENST00000616010	KNSTRN	Q9Y448	316 aa		32.09	■■■□□ 2.73
CCND3-223	ENST00000616010	NUDT16	Q96DE0	195 aa	Known RBP	32.09	■■■□□ 2.73
CCND3-223	ENST00000616010	PRR36	Q9H6K5	1346 aa		32.08	■■■□□ 2.73
CCND3-223	ENST00000616010	TOPAZ1	Q8N9V7	1692 aa		32.08	■■■□□ 2.73
CCND3-223	ENST00000616010	PPIP5K1	Q6PFW1	1433 aa		32.08	■■■□□ 2.73
CCND3-223	ENST00000616010	FMN2	Q9NZ56	1722 aa		32.07	■■■□□ 2.73
CCND3-223	ENST00000616010	USP32	Q8NFA0	1604 aa		32.07	■■■□□ 2.72
CCND3-223	ENST00000616010	PROSER2	Q86WR7	435 aa	Predicted RBP	32.07	■■■□□ 2.72
CCND3-223	ENST00000616010	CABP1	Q9NZU7	370 aa		32.07	■■■□□ 2.72
CCND3-223	ENST00000616010		A0A1W2PP64	1363 aa		32.06	■■■□□ 2.72
CCND3-223	ENST00000616010	CD163L1	Q9NR16	1453 aa		32.06	■■■□□ 2.72
CCND3-223	ENST00000616010	NUTM2F	A1L443	756 aa		32.06	■■■□□ 2.72
CCND3-223	ENST00000616010	CARD14	Q9BXL6	1004 aa		32.06	■■■□□ 2.72
CCND3-223	ENST00000616010	NSD3	Q9BZ95	1437 aa		32.05	■■■□□ 2.72
CCND3-223	ENST00000616010	C14orf37	Q86TY3	774 aa		32.04	■■■□□ 2.72
CCND3-223	ENST00000616010	CCDC61	Q9Y6R9	512 aa		32.04	■■■□□ 2.72
CCND3-223	ENST00000616010	KTN1	Q86UP2	1357 aa	Known RBP	32.04	■■■□□ 2.72
CCND3-223	ENST00000616010	ITSN1	Q15811	1721 aa		32.02	■■■□□ 2.72
CCND3-223	ENST00000616010	TERF2IP	Q9NYB0	399 aa		32.02	■■■□□ 2.72
CCND3-223	ENST00000616010	DMRT2	Q9Y5R5	561 aa		32.02	■■■□□ 2.72
CCND3-223	ENST00000616010	CC2D1B	Q5T0F9	858 aa	Known RBP	32.01	■■■□□ 2.71
CCND3-223	ENST00000616010	RGPD8	O14715	1765 aa	Predicted RBP	32.01	■■■□□ 2.71
CCND3-223	ENST00000616010	AMER1	Q5JTC6	1135 aa	Predicted RBP	32	■■■□□ 2.71
CCND3-223	ENST00000616010	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	32	■■■□□ 2.71
CCND3-223	ENST00000616010	TMEM94	Q12767	1356 aa		31.99	■■■□□ 2.71
CCND3-223	ENST00000616010	ANKAR	Q7Z5J8	1434 aa		31.99	■■■□□ 2.71
CCND3-223	ENST00000616010	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	31.98	■■■□□ 2.71
CCND3-223	ENST00000616010	PARD3	Q8TEW0	1356 aa		31.97	■■■□□ 2.71
CCND3-223	ENST00000616010	CCER2	I3L3R5	266 aa		31.95	■■■□□ 2.71
CCND3-223	ENST00000616010	NPC1L1	Q9UHC9	1359 aa		31.95	■■■□□ 2.71
CCND3-223	ENST00000616010	AKAP12	Q02952	1782 aa		31.95	■■■□□ 2.7
CCND3-223	ENST00000616010	RALBP1	Q15311	655 aa		31.94	■■■□□ 2.7
CCND3-223	ENST00000616010	CPSF1	Q10570	1443 aa	Known RBP	31.94	■■■□□ 2.7
CCND3-223	ENST00000616010	XIRP1	Q702N8	1843 aa	Known RBP	31.93	■■■□□ 2.7
CCND3-223	ENST00000616010	NCOA3	Q9Y6Q9	1424 aa		31.93	■■■□□ 2.7
CCND3-223	ENST00000616010	MON2	Q7Z3U7	1717 aa		31.93	■■■□□ 2.7
CCND3-223	ENST00000616010	CGNL1	Q0VF96	1302 aa		31.91	■■■□□ 2.7
CCND3-223	ENST00000616010	LRRC7	Q96NW7	1537 aa		31.9	■■■□□ 2.7
CCND3-223	ENST00000616010	C19orf44	Q9H6X5	657 aa		31.89	■■■□□ 2.7
CCND3-223	ENST00000616010	PLEKHG3	A1L390	1219 aa		31.88	■■■□□ 2.69
CCND3-223	ENST00000616010	MYBBP1A	Q9BQG0	1328 aa	Known RBP	31.87	■■■□□ 2.69
CCND3-223	ENST00000616010	ACE	P12821	1306 aa		31.86	■■■□□ 2.69
CCND3-223	ENST00000616010	DCC	P43146	1447 aa		31.86	■■■□□ 2.69
CCND3-223	ENST00000616010	KIF20B	Q96Q89	1820 aa		31.86	■■■□□ 2.69
CCND3-223	ENST00000616010	PMFBP1	Q8TBY8	1022 aa		31.85	■■■□□ 2.69
CCND3-223	ENST00000616010	EDC4	Q6P2E9	1401 aa	Known RBP	31.85	■■■□□ 2.69
CCND3-223	ENST00000616010	NRK	Q7Z2Y5	1582 aa		31.84	■■■□□ 2.69
CCND3-223	ENST00000616010	NSD2	O96028	1365 aa		31.83	■■■□□ 2.69
CCND3-223	ENST00000616010	MSH6	P52701	1360 aa		31.83	■■■□□ 2.69
CCND3-223	ENST00000616010	AEBP2	Q6ZN18	517 aa	Predicted RBP	31.82	■■■□□ 2.68
CCND3-223	ENST00000616010	POLR3A	O14802	1390 aa	Predicted RBP	31.82	■■■□□ 2.68
CCND3-223	ENST00000616010	CCDC184	Q52MB2	194 aa		31.82	■■■□□ 2.68
CCND3-223	ENST00000616010	ZNF692	Q9BU19	519 aa	Predicted RBP	31.82	■■■□□ 2.68
CCND3-223	ENST00000616010	ANKRD26	Q9UPS8	1709 aa		31.81	■■■□□ 2.68
CCND3-223	ENST00000616010	ATF3	P18847	181 aa		31.8	■■■□□ 2.68
CCND3-223	ENST00000616010	USP6	P35125	1406 aa		31.8	■■■□□ 2.68
CCND3-223	ENST00000616010	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	31.8	■■■□□ 2.68
CCND3-223	ENST00000616010	NGDN	Q8NEJ9	315 aa	Known RBP	31.8	■■■□□ 2.68
CCND3-223	ENST00000616010	MRS2	Q9HD23	443 aa		31.78	■■■□□ 2.68
CCND3-223	ENST00000616010	ESCO1	Q5FWF5	840 aa		31.77	■■■□□ 2.68
CCND3-223	ENST00000616010	C1orf167	Q5SNV9	1468 aa		31.77	■■■□□ 2.68
CCND3-223	ENST00000616010	MST1R	Q04912	1400 aa		31.77	■■■□□ 2.68
CCND3-223	ENST00000616010	PHF8	Q9UPP1	1060 aa		31.76	■■■□□ 2.68
CCND3-223	ENST00000616010	FYB1	O15117	783 aa		31.76	■■■□□ 2.67
CCND3-223	ENST00000616010	NLRP13	Q86W25	1043 aa		31.76	■■■□□ 2.67
CCND3-223	ENST00000616010	MORC1	Q86VD1	984 aa		31.75	■■■□□ 2.67
CCND3-223	ENST00000616010	GGNBP2	Q9H3C7	697 aa		31.75	■■■□□ 2.67

Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms