RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CHD2O14647 1828 aaKnown RBP19.67■□□□□ 0.74
USP39-220ENST00000613444 PIK3R4Q99570 1358 aa19.66■□□□□ 0.74
USP39-220ENST00000613444 MINK1Q8N4C8 1332 aaPredicted RBP19.66■□□□□ 0.74
USP39-220ENST00000613444 PANK3Q9H999 370 aa19.66■□□□□ 0.74
USP39-220ENST00000613444 NPHP4O75161 1426 aaPredicted RBP19.65■□□□□ 0.74
USP39-220ENST00000613444 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.64■□□□□ 0.73
USP39-220ENST00000613444 PRKRIP1Q9H875 184 aaPredicted RBP19.64■□□□□ 0.73
USP39-220ENST00000613444 PTCH1Q13635 1447 aa19.64■□□□□ 0.73
USP39-220ENST00000613444 AMOTL2Q9Y2J4 779 aa19.63■□□□□ 0.73
USP39-220ENST00000613444 LMTK3Q96Q04 1460 aa19.63■□□□□ 0.73
USP39-220ENST00000613444 NCKAP5LQ9HCH0 1330 aa19.62■□□□□ 0.73
USP39-220ENST00000613444 CABP2Q9NPB3 220 aa19.61■□□□□ 0.73
USP39-220ENST00000613444 ADGRB2O60241 1585 aa19.61■□□□□ 0.73
USP39-220ENST00000613444 CCER2I3L3R5 266 aa19.6■□□□□ 0.73
USP39-220ENST00000613444 CDK19Q9BWU1 502 aa19.59■□□□□ 0.73
USP39-220ENST00000613444 SLC12A5Q9H2X9 1139 aa19.57■□□□□ 0.72
USP39-220ENST00000613444 KCNA6P17658 529 aa19.57■□□□□ 0.72
USP39-220ENST00000613444 ATAD2Q6PL18 1390 aa19.56■□□□□ 0.72
USP39-220ENST00000613444 HSPA2P54652 639 aa19.56■□□□□ 0.72
USP39-220ENST00000613444 SRPK2P78362 688 aaKnown RBP19.56■□□□□ 0.72
USP39-220ENST00000613444 STRCQ7RTU9 1775 aa19.56■□□□□ 0.72
USP39-220ENST00000613444 WASLO00401 505 aaPredicted RBP19.56■□□□□ 0.72
USP39-220ENST00000613444 CARD14Q9BXL6 1004 aa19.55■□□□□ 0.72
USP39-220ENST00000613444 NINLQ9Y2I6 1382 aa19.55■□□□□ 0.72
USP39-220ENST00000613444 NWD1Q149M9 1564 aa19.55■□□□□ 0.72
USP39-220ENST00000613444 AMER1Q5JTC6 1135 aaPredicted RBP19.53■□□□□ 0.72
USP39-220ENST00000613444 TMC1Q8TDI8 760 aa19.53■□□□□ 0.72
USP39-220ENST00000613444 PARD3Q8TEW0 1356 aa19.53■□□□□ 0.72
USP39-220ENST00000613444 KTN1Q86UP2 1357 aaKnown RBP19.53■□□□□ 0.72
USP39-220ENST00000613444 CD163L1Q9NR16 1453 aa19.52■□□□□ 0.72
USP39-220ENST00000613444 ANKRD36BQ8N2N9 1353 aa19.51■□□□□ 0.71
USP39-220ENST00000613444 KNSTRNQ9Y448 316 aa19.51■□□□□ 0.71
USP39-220ENST00000613444 NPC1L1Q9UHC9 1359 aa19.51■□□□□ 0.71
USP39-220ENST00000613444 USP32Q8NFA0 1604 aa19.51■□□□□ 0.71
USP39-220ENST00000613444 ATP7BP35670 1465 aa19.5■□□□□ 0.71
USP39-220ENST00000613444 CNGB1Q14028 1251 aaPredicted RBP19.5■□□□□ 0.71
USP39-220ENST00000613444 NALCNQ8IZF0 1738 aa19.49■□□□□ 0.71
USP39-220ENST00000613444 RALBP1Q15311 655 aa19.49■□□□□ 0.71
USP39-220ENST00000613444 CCDC184Q52MB2 194 aa19.49■□□□□ 0.71
USP39-220ENST00000613444 TOPAZ1Q8N9V7 1692 aa19.49■□□□□ 0.71
USP39-220ENST00000613444 STRCP1A6NGW2 1772 aa19.48■□□□□ 0.71
USP39-220ENST00000613444 A0A1W2PP64 1363 aa19.48■□□□□ 0.71
USP39-220ENST00000613444 NSD3Q9BZ95 1437 aa19.48■□□□□ 0.71
USP39-220ENST00000613444 PRR36Q9H6K5 1346 aa19.48■□□□□ 0.71
USP39-220ENST00000613444 CC2D1BQ5T0F9 858 aaKnown RBP19.47■□□□□ 0.71
USP39-220ENST00000613444 NUDT16Q96DE0 195 aaKnown RBP19.46■□□□□ 0.71
USP39-220ENST00000613444 CABP1Q9NZU7 370 aa19.46■□□□□ 0.71
USP39-220ENST00000613444 RGPD8O14715 1765 aaPredicted RBP19.45■□□□□ 0.7
USP39-220ENST00000613444 FMN2Q9NZ56 1722 aa19.45■□□□□ 0.7
USP39-220ENST00000613444 PPIP5K1Q6PFW1 1433 aa19.44■□□□□ 0.7
USP39-220ENST00000613444 MYBBP1AQ9BQG0 1328 aaKnown RBP19.44■□□□□ 0.7
USP39-220ENST00000613444 AKAP12Q02952 1782 aa19.44■□□□□ 0.7
USP39-220ENST00000613444 NKTRP30414 1462 aaKnown RBP19.43■□□□□ 0.7
USP39-220ENST00000613444 CDC42BPGQ6DT37 1551 aa19.43■□□□□ 0.7
USP39-220ENST00000613444 CCDC61Q9Y6R9 512 aa19.43■□□□□ 0.7
USP39-220ENST00000613444 CPSF1Q10570 1443 aaKnown RBP19.43■□□□□ 0.7
USP39-220ENST00000613444 TERF2IPQ9NYB0 399 aa19.42■□□□□ 0.7
USP39-220ENST00000613444 ITSN1Q15811 1721 aa19.42■□□□□ 0.7
USP39-220ENST00000613444 MON2Q7Z3U7 1717 aa19.42■□□□□ 0.7
USP39-220ENST00000613444 ADGRL3Q9HAR2 1447 aa19.41■□□□□ 0.7
USP39-220ENST00000613444 RBM33Q96EV2 1170 aaKnown RBP19.4■□□□□ 0.7
USP39-220ENST00000613444 MRS2Q9HD23 443 aa19.39■□□□□ 0.69
USP39-220ENST00000613444 YTHDC1Q96MU7 727 aaKnown RBP19.39■□□□□ 0.69
USP39-220ENST00000613444 BRD4O60885 1362 aaPredicted RBP19.38■□□□□ 0.69
USP39-220ENST00000613444 CGNL1Q0VF96 1302 aa19.38■□□□□ 0.69
USP39-220ENST00000613444 ANKRD26Q9UPS8 1709 aa19.38■□□□□ 0.69
USP39-220ENST00000613444 ANKARQ7Z5J8 1434 aa19.38■□□□□ 0.69
USP39-220ENST00000613444 HDGFL2Q7Z4V5 671 aaPredicted RBP19.38■□□□□ 0.69
USP39-220ENST00000613444 KIF20BQ96Q89 1820 aa19.38■□□□□ 0.69
USP39-220ENST00000613444 NLRP13Q86W25 1043 aa19.37■□□□□ 0.69
USP39-220ENST00000613444 PLEKHG3A1L390 1219 aa19.37■□□□□ 0.69
USP39-220ENST00000613444 NUTM2FA1L443 756 aa19.37■□□□□ 0.69
USP39-220ENST00000613444 NSD2O96028 1365 aa19.36■□□□□ 0.69
USP39-220ENST00000613444 NRKQ7Z2Y5 1582 aa19.35■□□□□ 0.69
USP39-220ENST00000613444 PPP2R1AP30153 589 aa19.34■□□□□ 0.69
USP39-220ENST00000613444 XIRP1Q702N8 1843 aaKnown RBP19.34■□□□□ 0.69
USP39-220ENST00000613444 PROSER2Q86WR7 435 aaPredicted RBP19.34■□□□□ 0.69
USP39-220ENST00000613444 EDC4Q6P2E9 1401 aaKnown RBP19.34■□□□□ 0.69
USP39-220ENST00000613444 FYB1O15117 783 aa19.33■□□□□ 0.68
USP39-220ENST00000613444 ACEP12821 1306 aa19.32■□□□□ 0.68
USP39-220ENST00000613444 POLR3AO14802 1390 aaPredicted RBP19.31■□□□□ 0.68
USP39-220ENST00000613444 NCOA3Q9Y6Q9 1424 aa19.31■□□□□ 0.68
USP39-220ENST00000613444 PNISRQ8TF01 805 aaKnown RBP19.31■□□□□ 0.68
USP39-220ENST00000613444 ZNF692Q9BU19 519 aaPredicted RBP19.31■□□□□ 0.68
USP39-220ENST00000613444 TMEM94Q12767 1356 aa19.3■□□□□ 0.68
USP39-220ENST00000613444 MORC1Q86VD1 984 aa19.29■□□□□ 0.68
USP39-220ENST00000613444 USP6P35125 1406 aa19.29■□□□□ 0.68
USP39-220ENST00000613444 SSH2Q76I76 1423 aa19.29■□□□□ 0.68
USP39-220ENST00000613444 GGNBP2Q9H3C7 697 aa19.28■□□□□ 0.68
USP39-220ENST00000613444 PMFBP1Q8TBY8 1022 aa19.27■□□□□ 0.68
USP39-220ENST00000613444 C19orf44Q9H6X5 657 aa19.27■□□□□ 0.68
USP39-220ENST00000613444 ZNF335Q9H4Z2 1342 aaPredicted RBP19.27■□□□□ 0.68
USP39-220ENST00000613444 C14orf37Q86TY3 774 aa19.27■□□□□ 0.68
USP39-220ENST00000613444 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.27■□□□□ 0.68
USP39-220ENST00000613444 FAM9BQ8IZU0 186 aa19.27■□□□□ 0.68
USP39-220ENST00000613444 LRRC7Q96NW7 1537 aa19.26■□□□□ 0.67
USP39-220ENST00000613444 DCCP43146 1447 aa19.25■□□□□ 0.67
USP39-220ENST00000613444 DMRT2Q9Y5R5 561 aa19.24■□□□□ 0.67
USP39-220ENST00000613444 TTC21BQ7Z4L5 1316 aa19.24■□□□□ 0.67
USP39-220ENST00000613444 NME9Q86XW9 330 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms