RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 EXOSC9Q06265 439 aaKnown RBP17.96■□□□□ 0.46
COL6A1-207ENST00000612273 STAC3Q96MF2 364 aa17.95■□□□□ 0.46
COL6A1-207ENST00000612273 ADGRL1O94910 1474 aa17.95■□□□□ 0.46
COL6A1-207ENST00000612273 PTPRTO14522 1441 aa17.95■□□□□ 0.46
COL6A1-207ENST00000612273 TRPM2O94759 1503 aa17.94■□□□□ 0.46
COL6A1-207ENST00000612273 BECN1Q14457 450 aa17.93■□□□□ 0.46
COL6A1-207ENST00000612273 LAMC1P11047 1609 aa17.93■□□□□ 0.46
COL6A1-207ENST00000612273 SYNMO15061 1565 aa17.93■□□□□ 0.46
COL6A1-207ENST00000612273 ELL2O00472 640 aaPredicted RBP17.93■□□□□ 0.46
COL6A1-207ENST00000612273 NPM1P06748 294 aaKnown RBP eCLIP17.93■□□□□ 0.46
COL6A1-207ENST00000612273 ZCCHC11Q5TAX3 1644 aaKnown RBP17.92■□□□□ 0.46
COL6A1-207ENST00000612273 MAPK8IP3Q9UPT6 1336 aa17.92■□□□□ 0.46
COL6A1-207ENST00000612273 PMFBP1Q8TBY8 1022 aa17.92■□□□□ 0.46
COL6A1-207ENST00000612273 NPC1L1Q9UHC9 1359 aa17.91■□□□□ 0.46
COL6A1-207ENST00000612273 RNF17Q9BXT8 1623 aaKnown RBP17.91■□□□□ 0.46
COL6A1-207ENST00000612273 ZFYVE16Q7Z3T8 1539 aa17.91■□□□□ 0.46
COL6A1-207ENST00000612273 RWDD1Q9H446 243 aaPredicted RBP17.91■□□□□ 0.46
COL6A1-207ENST00000612273 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.9■□□□□ 0.46
COL6A1-207ENST00000612273 C14orf93Q9H972 538 aaKnown RBP17.9■□□□□ 0.46
COL6A1-207ENST00000612273 MYH16Q9H6N6 1097 aa17.9■□□□□ 0.46
COL6A1-207ENST00000612273 POLR3AO14802 1390 aaPredicted RBP17.9■□□□□ 0.46
COL6A1-207ENST00000612273 DZIP1LQ8IYY4 767 aaKnown RBP17.9■□□□□ 0.46
COL6A1-207ENST00000612273 IQGAP1P46940 1657 aa17.89■□□□□ 0.45
COL6A1-207ENST00000612273 SLC24A1O60721 1099 aa17.89■□□□□ 0.45
COL6A1-207ENST00000612273 ZKSCAN2Q63HK3 967 aa17.89■□□□□ 0.45
COL6A1-207ENST00000612273 SSH1Q8WYL5 1049 aa17.89■□□□□ 0.45
COL6A1-207ENST00000612273 ATP7AQ04656 1500 aa17.88■□□□□ 0.45
COL6A1-207ENST00000612273 TBC1D2Q9BYX2 928 aa17.88■□□□□ 0.45
COL6A1-207ENST00000612273 THUMPD2Q9BTF0 503 aaKnown RBP17.87■□□□□ 0.45
COL6A1-207ENST00000612273 EVC2Q86UK5 1308 aa17.87■□□□□ 0.45
COL6A1-207ENST00000612273 RTEL1-TNFRSF6BF6WH68 1400 aa17.87■□□□□ 0.45
COL6A1-207ENST00000612273 TRIM27P14373 513 aa17.87■□□□□ 0.45
COL6A1-207ENST00000612273 RIPK4P57078 832 aa17.87■□□□□ 0.45
COL6A1-207ENST00000612273 MVPQ14764 893 aaKnown RBP17.87■□□□□ 0.45
COL6A1-207ENST00000612273 NOB1Q9ULX3 412 aaKnown RBP17.87■□□□□ 0.45
COL6A1-207ENST00000612273 WDR63Q8IWG1 891 aa17.86■□□□□ 0.45
COL6A1-207ENST00000612273 KDM5AP29375 1690 aaKnown RBP17.86■□□□□ 0.45
COL6A1-207ENST00000612273 LNPKQ9C0E8 428 aa17.85■□□□□ 0.45
COL6A1-207ENST00000612273 SPHKAPQ2M3C7 1700 aa17.85■□□□□ 0.45
COL6A1-207ENST00000612273 C1orf115Q9H7X2 142 aa17.85■□□□□ 0.45
COL6A1-207ENST00000612273 FOXD4L1Q9NU39 408 aa17.85■□□□□ 0.45
COL6A1-207ENST00000612273 HMOX1P09601 288 aa17.85■□□□□ 0.45
COL6A1-207ENST00000612273 MYOM1P52179 1685 aa17.84■□□□□ 0.45
COL6A1-207ENST00000612273 TMPOP42166 694 aaKnown RBP17.84■□□□□ 0.45
COL6A1-207ENST00000612273 IDI1Q13907 227 aa17.84■□□□□ 0.45
COL6A1-207ENST00000612273 STAG3Q9UJ98 1225 aa17.84■□□□□ 0.45
COL6A1-207ENST00000612273 TMEM57Q8N5G2 664 aa17.83■□□□□ 0.44
COL6A1-207ENST00000612273 PRAM1Q96QH2 718 aa17.83■□□□□ 0.44
COL6A1-207ENST00000612273 ABCA6Q8N139 1617 aa17.83■□□□□ 0.44
COL6A1-207ENST00000612273 NGEFQ8N5V2 710 aa17.82■□□□□ 0.44
COL6A1-207ENST00000612273 TBC1D32Q96NH3 1257 aa17.82■□□□□ 0.44
COL6A1-207ENST00000612273 VGFO15240 615 aaPredicted RBP17.81■□□□□ 0.44
COL6A1-207ENST00000612273 ASXL2Q76L83 1435 aa17.81■□□□□ 0.44
COL6A1-207ENST00000612273 NPATQ14207 1427 aa17.81■□□□□ 0.44
COL6A1-207ENST00000612273 C22orf23Q9BZE7 217 aa17.8■□□□□ 0.44
COL6A1-207ENST00000612273 CABP1Q9NZU7 370 aa17.79■□□□□ 0.44
COL6A1-207ENST00000612273 TRIM35Q9UPQ4 493 aa17.79■□□□□ 0.44
COL6A1-207ENST00000612273 MAP3K4Q9Y6R4 1608 aa17.79■□□□□ 0.44
COL6A1-207ENST00000612273 FBXO31Q5XUX0 539 aaPredicted RBP17.78■□□□□ 0.44
COL6A1-207ENST00000612273 FYB1O15117 783 aa17.78■□□□□ 0.44
COL6A1-207ENST00000612273 ATF7IPQ6VMQ6 1270 aa17.78■□□□□ 0.44
COL6A1-207ENST00000612273 SHROOM2Q13796 1616 aa17.78■□□□□ 0.44
COL6A1-207ENST00000612273 CEP152O94986 1710 aa17.78■□□□□ 0.44
COL6A1-207ENST00000612273 PHF23Q9BUL5 403 aaPredicted RBP17.77■□□□□ 0.44
COL6A1-207ENST00000612273 TET3O43151 1660 aa17.77■□□□□ 0.44
COL6A1-207ENST00000612273 A0A1W2PP64 1363 aa17.76■□□□□ 0.43
COL6A1-207ENST00000612273 MLECQ14165 292 aa17.76■□□□□ 0.43
COL6A1-207ENST00000612273 CLASP1Q7Z460 1538 aa17.76■□□□□ 0.43
COL6A1-207ENST00000612273 DIAPH1O60610 1272 aaKnown RBP17.76■□□□□ 0.43
COL6A1-207ENST00000612273 PRKAR2BP31323 418 aa17.76■□□□□ 0.43
COL6A1-207ENST00000612273 WAPLQ7Z5K2 1190 aa17.76■□□□□ 0.43
COL6A1-207ENST00000612273 APBB1O00213 710 aa17.74■□□□□ 0.43
COL6A1-207ENST00000612273 ANKRD45Q5TZF3 282 aa17.74■□□□□ 0.43
COL6A1-207ENST00000612273 SOX12O15370 315 aa17.74■□□□□ 0.43
COL6A1-207ENST00000612273 DDX19BQ9UMR2 479 aa17.74■□□□□ 0.43
COL6A1-207ENST00000612273 HSP90AA1P07900 732 aaKnown RBP17.73■□□□□ 0.43
COL6A1-207ENST00000612273 ANTXR1Q9H6X2 564 aa17.73■□□□□ 0.43
COL6A1-207ENST00000612273 TERF2IPQ9NYB0 399 aa17.73■□□□□ 0.43
COL6A1-207ENST00000612273 MYOM2P54296 1465 aa17.73■□□□□ 0.43
COL6A1-207ENST00000612273 ZNF518AQ6AHZ1 1483 aa17.73■□□□□ 0.43
COL6A1-207ENST00000612273 NINLQ9Y2I6 1382 aa17.73■□□□□ 0.43
COL6A1-207ENST00000612273 NUTM2FA1L443 756 aa17.73■□□□□ 0.43
COL6A1-207ENST00000612273 PANK2Q9BZ23 570 aa17.73■□□□□ 0.43
COL6A1-207ENST00000612273 CDK19Q9BWU1 502 aa17.72■□□□□ 0.43
COL6A1-207ENST00000612273 ZRANB1Q9UGI0 708 aa17.72■□□□□ 0.43
COL6A1-207ENST00000612273 ANKRD36BQ8N2N9 1353 aa17.72■□□□□ 0.43
COL6A1-207ENST00000612273 UHRF1BP1LA0JNW5 1464 aa17.72■□□□□ 0.43
COL6A1-207ENST00000612273 CCDC27Q2M243 656 aa17.72■□□□□ 0.43
COL6A1-207ENST00000612273 TSPYL6Q8N831 410 aa17.72■□□□□ 0.43
COL6A1-207ENST00000612273 PHACTR3Q96KR7 559 aa17.72■□□□□ 0.43
COL6A1-207ENST00000612273 MROH2AA6NES4 1674 aa17.72■□□□□ 0.43
COL6A1-207ENST00000612273 PLEKHF1Q96S99 279 aa17.71■□□□□ 0.43
COL6A1-207ENST00000612273 CD109Q6YHK3 1445 aa17.71■□□□□ 0.43
COL6A1-207ENST00000612273 SBNO2Q9Y2G9 1366 aa17.71■□□□□ 0.43
COL6A1-207ENST00000612273 DCTN1Q14203 1278 aa17.71■□□□□ 0.42
COL6A1-207ENST00000612273 HDGFL2Q7Z4V5 671 aaPredicted RBP17.7■□□□□ 0.42
COL6A1-207ENST00000612273 HSCBQ8IWL3 235 aa17.7■□□□□ 0.42
COL6A1-207ENST00000612273 EMILIN1Q9Y6C2 1016 aa17.7■□□□□ 0.42
COL6A1-207ENST00000612273 PPRC1Q5VV67 1664 aaKnown RBP17.7■□□□□ 0.42
COL6A1-207ENST00000612273 NCKAP5LQ9HCH0 1330 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms