RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 PIP4K2BP78356 416 aa23.67■■□□□ 1.38
CCDC28A-202ENST00000611852 PRAM1Q96QH2 718 aa23.67■■□□□ 1.38
CCDC28A-202ENST00000611852 ROCK2O75116 1388 aaKnown RBP23.65■■□□□ 1.38
CCDC28A-202ENST00000611852 SCAF1Q9H7N4 1312 aaKnown RBP23.64■■□□□ 1.38
CCDC28A-202ENST00000611852 POGKQ9P215 609 aa23.64■■□□□ 1.38
CCDC28A-202ENST00000611852 SLAIN2Q9P270 581 aa23.64■■□□□ 1.38
CCDC28A-202ENST00000611852 ARHGEF28Q8N1W1 1705 aaKnown RBP23.64■■□□□ 1.38
CCDC28A-202ENST00000611852 SAFB2Q14151 953 aaKnown RBP eCLIP23.63■■□□□ 1.37
CCDC28A-202ENST00000611852 RALGAPBQ86X10 1494 aa23.63■■□□□ 1.37
CCDC28A-202ENST00000611852 GPRASP1Q5JY77 1395 aa23.62■■□□□ 1.37
CCDC28A-202ENST00000611852 CDC42BPGQ6DT37 1551 aa23.61■■□□□ 1.37
CCDC28A-202ENST00000611852 MST1RQ04912 1400 aa23.59■■□□□ 1.37
CCDC28A-202ENST00000611852 ROBO1Q9Y6N7 1651 aa23.57■■□□□ 1.36
CCDC28A-202ENST00000611852 CARD11Q9BXL7 1154 aa23.56■■□□□ 1.36
CCDC28A-202ENST00000611852 MINK1Q8N4C8 1332 aaPredicted RBP23.55■■□□□ 1.36
CCDC28A-202ENST00000611852 ADGRB2O60241 1585 aa23.55■■□□□ 1.36
CCDC28A-202ENST00000611852 C1orf167Q5SNV9 1468 aa23.54■■□□□ 1.36
CCDC28A-202ENST00000611852 HIRIP3Q9BW71 556 aaPredicted RBP23.53■■□□□ 1.36
CCDC28A-202ENST00000611852 CENPJQ9HC77 1338 aaPredicted RBP23.52■■□□□ 1.36
CCDC28A-202ENST00000611852 FMN2Q9NZ56 1722 aa23.51■■□□□ 1.35
CCDC28A-202ENST00000611852 BRINP3Q76B58 766 aa23.51■■□□□ 1.35
CCDC28A-202ENST00000611852 EIF3AQ14152 1382 aaKnown RBP23.51■■□□□ 1.35
CCDC28A-202ENST00000611852 HSPA1LP34931 641 aa23.49■■□□□ 1.35
CCDC28A-202ENST00000611852 NUTM2FA1L443 756 aa23.49■■□□□ 1.35
CCDC28A-202ENST00000611852 QRICH2Q9H0J4 1663 aa23.48■■□□□ 1.35
CCDC28A-202ENST00000611852 WASLO00401 505 aaPredicted RBP23.48■■□□□ 1.35
CCDC28A-202ENST00000611852 ORAI2Q96SN7 254 aa23.47■■□□□ 1.35
CCDC28A-202ENST00000611852 ESCO1Q5FWF5 840 aa23.43■■□□□ 1.34
CCDC28A-202ENST00000611852 ANKARQ7Z5J8 1434 aa23.43■■□□□ 1.34
CCDC28A-202ENST00000611852 USP32Q8NFA0 1604 aa23.43■■□□□ 1.34
CCDC28A-202ENST00000611852 TULP4Q9NRJ4 1543 aa23.42■■□□□ 1.34
CCDC28A-202ENST00000611852 RGPD8O14715 1765 aaPredicted RBP23.42■■□□□ 1.34
CCDC28A-202ENST00000611852 AHDC1Q5TGY3 1603 aaPredicted RBP23.42■■□□□ 1.34
CCDC28A-202ENST00000611852 CDK19Q9BWU1 502 aa23.42■■□□□ 1.34
CCDC28A-202ENST00000611852 PRR36Q9H6K5 1346 aa23.4■■□□□ 1.34
CCDC28A-202ENST00000611852 PHLPP1O60346 1717 aa23.4■■□□□ 1.34
CCDC28A-202ENST00000611852 NHSL1Q5SYE7 1610 aa23.4■■□□□ 1.34
CCDC28A-202ENST00000611852 SBNO2Q9Y2G9 1366 aa23.39■■□□□ 1.33
CCDC28A-202ENST00000611852 DDX17Q92841 729 aaKnown RBP23.38■■□□□ 1.33
CCDC28A-202ENST00000611852 USP47Q96K76 1375 aa23.38■■□□□ 1.33
CCDC28A-202ENST00000611852 ATP7BP35670 1465 aa23.37■■□□□ 1.33
CCDC28A-202ENST00000611852 ST20-MTHFSA0A0A6YYL1 179 aa23.37■■□□□ 1.33
CCDC28A-202ENST00000611852 COL16A1Q07092 1604 aaPredicted RBP23.37■■□□□ 1.33
CCDC28A-202ENST00000611852 NUDT16Q96DE0 195 aaKnown RBP23.36■■□□□ 1.33
CCDC28A-202ENST00000611852 PHF8Q9UPP1 1060 aa23.36■■□□□ 1.33
CCDC28A-202ENST00000611852 EVC2Q86UK5 1308 aa23.36■■□□□ 1.33
CCDC28A-202ENST00000611852 SRPK2P78362 688 aaKnown RBP23.35■■□□□ 1.33
CCDC28A-202ENST00000611852 KIF1AQ12756 1690 aa23.35■■□□□ 1.33
CCDC28A-202ENST00000611852 FOXO3O43524 673 aa23.34■■□□□ 1.33
CCDC28A-202ENST00000611852 CABP2Q9NPB3 220 aa23.34■■□□□ 1.33
CCDC28A-202ENST00000611852 TESK2Q96S53 571 aa23.33■■□□□ 1.33
CCDC28A-202ENST00000611852 NPHP3Q7Z494 1330 aa23.33■■□□□ 1.33
CCDC28A-202ENST00000611852 ITSN1Q15811 1721 aa23.32■■□□□ 1.32
CCDC28A-202ENST00000611852 SOS2Q07890 1332 aaPredicted RBP23.31■■□□□ 1.32
CCDC28A-202ENST00000611852 PMFBP1Q8TBY8 1022 aa23.31■■□□□ 1.32
CCDC28A-202ENST00000611852 CCDC61Q9Y6R9 512 aa23.31■■□□□ 1.32
CCDC28A-202ENST00000611852 TOPAZ1Q8N9V7 1692 aa23.31■■□□□ 1.32
CCDC28A-202ENST00000611852 PXDNQ92626 1479 aa23.29■■□□□ 1.32
CCDC28A-202ENST00000611852 XPCQ01831 940 aaPredicted RBP23.28■■□□□ 1.32
CCDC28A-202ENST00000611852 LRRC59Q96AG4 307 aaKnown RBP23.28■■□□□ 1.32
CCDC28A-202ENST00000611852 JCADQ9P266 1359 aa23.27■■□□□ 1.31
CCDC28A-202ENST00000611852 SLC24A1O60721 1099 aa23.26■■□□□ 1.31
CCDC28A-202ENST00000611852 PPIP5K1Q6PFW1 1433 aa23.26■■□□□ 1.31
CCDC28A-202ENST00000611852 PLEKHG3A1L390 1219 aa23.25■■□□□ 1.31
CCDC28A-202ENST00000611852 EIF4G2P78344 907 aaKnown RBP eCLIP23.24■■□□□ 1.31
CCDC28A-202ENST00000611852 KRT28Q7Z3Y7 464 aa23.24■■□□□ 1.31
CCDC28A-202ENST00000611852 NGDNQ8NEJ9 315 aaKnown RBP23.24■■□□□ 1.31
CCDC28A-202ENST00000611852 ATAD2Q6PL18 1390 aa23.23■■□□□ 1.31
CCDC28A-202ENST00000611852 PSME1Q06323 249 aa23.23■■□□□ 1.31
CCDC28A-202ENST00000611852 POLR3AO14802 1390 aaPredicted RBP23.23■■□□□ 1.31
CCDC28A-202ENST00000611852 SHPRHQ149N8 1683 aa23.22■■□□□ 1.31
CCDC28A-202ENST00000611852 HSPA5P11021 654 aaKnown RBP23.22■■□□□ 1.31
CCDC28A-202ENST00000611852 PUS7Q96PZ0 661 aaKnown RBP23.22■■□□□ 1.31
CCDC28A-202ENST00000611852 CABP1Q9NZU7 370 aa23.22■■□□□ 1.31
CCDC28A-202ENST00000611852 DISP3Q9P2K9 1392 aa23.21■■□□□ 1.31
CCDC28A-202ENST00000611852 ACEP12821 1306 aa23.21■■□□□ 1.31
CCDC28A-202ENST00000611852 PNPLA6Q8IY17 1366 aa23.2■■□□□ 1.31
CCDC28A-202ENST00000611852 TMF1P82094 1093 aa23.2■■□□□ 1.3
CCDC28A-202ENST00000611852 SPATA31A3Q5VYP0 1347 aa23.19■■□□□ 1.3
CCDC28A-202ENST00000611852 SBNO1A3KN83 1393 aa23.18■■□□□ 1.3
CCDC28A-202ENST00000611852 TRPM3Q9HCF6 1732 aaPredicted RBP23.17■■□□□ 1.3
CCDC28A-202ENST00000611852 SPATA31A6Q5VVP1 1343 aa23.17■■□□□ 1.3
CCDC28A-202ENST00000611852 TNS3Q68CZ2 1445 aa23.16■■□□□ 1.3
CCDC28A-202ENST00000611852 COL22A1Q8NFW1 1626 aaPredicted RBP23.13■■□□□ 1.29
CCDC28A-202ENST00000611852 MED1Q15648 1581 aaPredicted RBP23.13■■□□□ 1.29
CCDC28A-202ENST00000611852 CDCA8Q53HL2 280 aa23.13■■□□□ 1.29
CCDC28A-202ENST00000611852 TMC1Q8TDI8 760 aa23.13■■□□□ 1.29
CCDC28A-202ENST00000611852 SLC12A5Q9H2X9 1139 aa23.12■■□□□ 1.29
CCDC28A-202ENST00000611852 CPSF1Q10570 1443 aaKnown RBP23.12■■□□□ 1.29
CCDC28A-202ENST00000611852 ARHGEF10O15013 1369 aa23.11■■□□□ 1.29
CCDC28A-202ENST00000611852 PAK3O75914 559 aaPredicted RBP23.11■■□□□ 1.29
CCDC28A-202ENST00000611852 ALS2Q96Q42 1657 aa23.11■■□□□ 1.29
CCDC28A-202ENST00000611852 USP6P35125 1406 aa23.11■■□□□ 1.29
CCDC28A-202ENST00000611852 LRP6O75581 1613 aa23.1■■□□□ 1.29
CCDC28A-202ENST00000611852 LMOD2Q6P5Q4 547 aa23.1■■□□□ 1.29
CCDC28A-202ENST00000611852 ZNF692Q9BU19 519 aaPredicted RBP23.1■■□□□ 1.29
CCDC28A-202ENST00000611852 CD163L1Q9NR16 1453 aa23.1■■□□□ 1.29
CCDC28A-202ENST00000611852 AKAP12Q02952 1782 aa23.1■■□□□ 1.29
CCDC28A-202ENST00000611852 NINLQ9Y2I6 1382 aa23.1■■□□□ 1.29
CCDC28A-202ENST00000611852 NUTM2BA6NNL0 878 aaPredicted RBP23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms