RNA–Protein interactions for RNA: ENST00000607020.5

SSBP4-214, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 504 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-214ENST00000607020 CLTCL1P53675 1640 aa22.77■■□□□ 1.24
SSBP4-214ENST00000607020 MYOM2P54296 1465 aa22.77■■□□□ 1.24
SSBP4-214ENST00000607020 BCL9LQ86UU0 1499 aa22.76■■□□□ 1.23
SSBP4-214ENST00000607020 ESCO1Q5FWF5 840 aa22.74■■□□□ 1.23
SSBP4-214ENST00000607020 GJD4Q96KN9 370 aaPredicted RBP22.74■■□□□ 1.23
SSBP4-214ENST00000607020 COL22A1Q8NFW1 1626 aaPredicted RBP22.71■■□□□ 1.23
SSBP4-214ENST00000607020 FOXO3O43524 673 aa22.71■■□□□ 1.23
SSBP4-214ENST00000607020 LRPPRCP42704 1394 aaKnown RBP22.7■■□□□ 1.22
SSBP4-214ENST00000607020 NAIPQ13075 1403 aa22.7■■□□□ 1.22
SSBP4-214ENST00000607020 PXDNQ92626 1479 aa22.7■■□□□ 1.22
SSBP4-214ENST00000607020 UNC5CLQ8IV45 518 aa22.67■■□□□ 1.22
SSBP4-214ENST00000607020 CDC42BPGQ6DT37 1551 aa22.64■■□□□ 1.22
SSBP4-214ENST00000607020 XPCQ01831 940 aaPredicted RBP22.64■■□□□ 1.21
SSBP4-214ENST00000607020 SLC4A1APQ9BWU0 796 aaKnown RBP22.64■■□□□ 1.21
SSBP4-214ENST00000607020 EP400Q96L91 3159 aa22.63■■□□□ 1.21
SSBP4-214ENST00000607020 PPARGC1BQ86YN6 1023 aaKnown RBP22.63■■□□□ 1.21
SSBP4-214ENST00000607020 TECPR2O15040 1411 aa22.63■■□□□ 1.21
SSBP4-214ENST00000607020 RRBP1Q9P2E9 1410 aaKnown RBP22.63■■□□□ 1.21
SSBP4-214ENST00000607020 ABCC11Q96J66 1382 aa22.63■■□□□ 1.21
SSBP4-214ENST00000607020 SPATA31A3Q5VYP0 1347 aa22.62■■□□□ 1.21
SSBP4-214ENST00000607020 SLIT2O94813 1529 aa22.62■■□□□ 1.21
SSBP4-214ENST00000607020 KIF1BO60333 1816 aa22.61■■□□□ 1.21
SSBP4-214ENST00000607020 ADGRF5Q8IZF2 1346 aa22.61■■□□□ 1.21
SSBP4-214ENST00000607020 BLMP54132 1417 aaPredicted RBP22.61■■□□□ 1.21
SSBP4-214ENST00000607020 WAPLQ7Z5K2 1190 aa22.61■■□□□ 1.21
SSBP4-214ENST00000607020 SIRT1Q96EB6 747 aa22.59■■□□□ 1.21
SSBP4-214ENST00000607020 RALGAPBQ86X10 1494 aa22.59■■□□□ 1.21
SSBP4-214ENST00000607020 ONECUT3O60422 494 aaPredicted RBP22.58■■□□□ 1.21
SSBP4-214ENST00000607020 STK26Q9P289 416 aa22.58■■□□□ 1.21
SSBP4-214ENST00000607020 ANKRD30BQ9BXX2 1392 aa22.56■■□□□ 1.2
SSBP4-214ENST00000607020 NUTM2FA1L443 756 aa22.56■■□□□ 1.2
SSBP4-214ENST00000607020 KRT28Q7Z3Y7 464 aa22.56■■□□□ 1.2
SSBP4-214ENST00000607020 VPS72Q15906 364 aa22.55■■□□□ 1.2
SSBP4-214ENST00000607020 CCDC144AA2RUR9 1427 aa22.55■■□□□ 1.2
SSBP4-214ENST00000607020 SEPT12Q8IYM1 358 aa22.54■■□□□ 1.2
SSBP4-214ENST00000607020 PLEKHH1Q9ULM0 1364 aa22.53■■□□□ 1.2
SSBP4-214ENST00000607020 DEFB132Q7Z7B7 95 aa22.53■■□□□ 1.2
SSBP4-214ENST00000607020 PSME1Q06323 249 aa22.52■■□□□ 1.2
SSBP4-214ENST00000607020 TMEM132EQ6IEE7 984 aa22.52■■□□□ 1.2
SSBP4-214ENST00000607020 GLI3P10071 1580 aa22.51■■□□□ 1.19
SSBP4-214ENST00000607020 SPATA31E1Q6ZUB1 1445 aa22.51■■□□□ 1.19
SSBP4-214ENST00000607020 SF3B2Q13435 895 aaKnown RBP22.51■■□□□ 1.19
SSBP4-214ENST00000607020 RGL3Q3MIN7 710 aa22.51■■□□□ 1.19
SSBP4-214ENST00000607020 PPLO60437 1756 aa22.5■■□□□ 1.19
SSBP4-214ENST00000607020 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.49■■□□□ 1.19
SSBP4-214ENST00000607020 PHF8Q9UPP1 1060 aa22.49■■□□□ 1.19
SSBP4-214ENST00000607020 SBNO1A3KN83 1393 aa22.48■■□□□ 1.19
SSBP4-214ENST00000607020 KRT27Q7Z3Y8 459 aa22.47■■□□□ 1.19
SSBP4-214ENST00000607020 MARF1Q9Y4F3 1742 aaKnown RBP22.47■■□□□ 1.19
SSBP4-214ENST00000607020 PIK3C2GO75747 1445 aa22.47■■□□□ 1.19
SSBP4-214ENST00000607020 TNS3Q68CZ2 1445 aa22.47■■□□□ 1.19
SSBP4-214ENST00000607020 YTHDC2Q9H6S0 1430 aaKnown RBP22.47■■□□□ 1.19
SSBP4-214ENST00000607020 C14orf93Q9H972 538 aaKnown RBP22.46■■□□□ 1.19
SSBP4-214ENST00000607020 HAP1P54257 671 aaPredicted RBP22.45■■□□□ 1.18
SSBP4-214ENST00000607020 CABLES1Q8TDN4 633 aa22.45■■□□□ 1.18
SSBP4-214ENST00000607020 USP32Q8NFA0 1604 aa22.43■■□□□ 1.18
SSBP4-214ENST00000607020 ARHGEF10O15013 1369 aa22.43■■□□□ 1.18
SSBP4-214ENST00000607020 FAM83GA6ND36 823 aa22.43■■□□□ 1.18
SSBP4-214ENST00000607020 MPHOSPH9Q99550 1183 aa22.42■■□□□ 1.18
SSBP4-214ENST00000607020 KIF1AQ12756 1690 aa22.42■■□□□ 1.18
SSBP4-214ENST00000607020 CCDC9Q9Y3X0 531 aaKnown RBP22.41■■□□□ 1.18
SSBP4-214ENST00000607020 NRXN1Q9ULB1 1477 aa22.4■■□□□ 1.18
SSBP4-214ENST00000607020 BAG6P46379 1132 aa22.39■■□□□ 1.17
SSBP4-214ENST00000607020 FMN2Q9NZ56 1722 aa22.39■■□□□ 1.17
SSBP4-214ENST00000607020 DHX57Q6P158 1386 aaKnown RBP22.38■■□□□ 1.17
SSBP4-214ENST00000607020 KNDC1Q76NI1 1749 aa22.37■■□□□ 1.17
SSBP4-214ENST00000607020 HRCP23327 699 aa22.36■■□□□ 1.17
SSBP4-214ENST00000607020 LMOD2Q6P5Q4 547 aa22.36■■□□□ 1.17
SSBP4-214ENST00000607020 CFAP70Q5T0N1 1121 aa22.35■■□□□ 1.17
SSBP4-214ENST00000607020 PRAM1Q96QH2 718 aa22.35■■□□□ 1.17
SSBP4-214ENST00000607020 ANKARQ7Z5J8 1434 aa22.34■■□□□ 1.17
SSBP4-214ENST00000607020 LRP5O75197 1615 aa22.33■■□□□ 1.17
SSBP4-214ENST00000607020 FAM98CQ17RN3 349 aaKnown RBP22.33■■□□□ 1.17
SSBP4-214ENST00000607020 BTG4Q9NY30 223 aa22.32■■□□□ 1.16
SSBP4-214ENST00000607020 ACIN1Q9UKV3 1341 aaKnown RBP22.31■■□□□ 1.16
SSBP4-214ENST00000607020 NWD2Q9ULI1 1742 aa22.31■■□□□ 1.16
SSBP4-214ENST00000607020 PSDA5PKW4 1024 aaPredicted RBP22.31■■□□□ 1.16
SSBP4-214ENST00000607020 PMFBP1Q8TBY8 1022 aa22.31■■□□□ 1.16
SSBP4-214ENST00000607020 BRWD3Q6RI45 1802 aa22.31■■□□□ 1.16
SSBP4-214ENST00000607020 PLEKHG5O94827 1062 aa22.3■■□□□ 1.16
SSBP4-214ENST00000607020 IFT172Q9UG01 1749 aa22.29■■□□□ 1.16
SSBP4-214ENST00000607020 A0A0G2JS52 829 aa22.29■■□□□ 1.16
SSBP4-214ENST00000607020 MYT1Q01538 1121 aa22.29■■□□□ 1.16
SSBP4-214ENST00000607020 SAFB2Q14151 953 aaKnown RBP eCLIP22.29■■□□□ 1.161e-6■■■■□ 20.5
SSBP4-214ENST00000607020 POGKQ9P215 609 aa22.29■■□□□ 1.16
SSBP4-214ENST00000607020 SPATA31A5Q5VU36 1347 aa22.29■■□□□ 1.16
SSBP4-214ENST00000607020 SPATA31A7Q8IWB4 1347 aa22.29■■□□□ 1.16
SSBP4-214ENST00000607020 EN1Q05925 392 aaPredicted RBP22.28■■□□□ 1.16
SSBP4-214ENST00000607020 GPRASP1Q5JY77 1395 aa22.27■■□□□ 1.16
SSBP4-214ENST00000607020 DISP2A7MBM2 1401 aa22.27■■□□□ 1.16
SSBP4-214ENST00000607020 DLC1Q96QB1 1528 aa22.26■■□□□ 1.15
SSBP4-214ENST00000607020 PLCH1Q4KWH8 1693 aa22.25■■□□□ 1.15
SSBP4-214ENST00000607020 EIF3AQ14152 1382 aaKnown RBP22.24■■□□□ 1.15
SSBP4-214ENST00000607020 R3HDM1Q15032 1099 aaKnown RBP22.22■■□□□ 1.15
SSBP4-214ENST00000607020 PRR36Q9H6K5 1346 aa22.22■■□□□ 1.15
SSBP4-214ENST00000607020 FAM182BQ5T319 152 aa22.21■■□□□ 1.15
SSBP4-214ENST00000607020 WASLO00401 505 aaPredicted RBP22.2■■□□□ 1.14
SSBP4-214ENST00000607020 CAMKK2Q96RR4 588 aa22.2■■□□□ 1.14
SSBP4-214ENST00000607020 FAM196AQ6ZSG2 479 aa22.19■■□□□ 1.14
SSBP4-214ENST00000607020 HIRIP3Q9BW71 556 aaPredicted RBP22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms